Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212105g00001 ATGGAACACATCACGTTCACCAACGGCAACGGTAACGGCCACCTCCACCACCACCACCAGAACCACAATGATGACTCATTCTGCTTGAAAACCACCACCACCACCACCACCCCCACTAATGTCAGTGATCCGTTGAATTGGGGAGTGGCGGCAGAGTCACTGAAGGGGAGCCACCTGGATGAGGTAAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTGGTCAAGCTGGGTGGAGAGACCCTGACGATATCTCAGGTGGCGGCGATCGCGGCCCACGACCAAGGTGTGACCGTCGAGCTGTCGGAGTCGGCCAGGGCGGGCGTTAAGGCCAGCAGTGATTGGGTTATGGACAGCATGAACAACGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGGACCAAACAAGGTGGTGCTCTCCAGAAAGAGCTCATCAGGTTTTTGAATGCTGGAATATTCGGCAATGGCACAGAATCAAGCCACACATTGCCACACACTGCAACGAGAGCAGCAATGTTAGTGAGGATCAACACTCTTCTCCAAGGCTACTCAGGCATCAGGTTTGAAATCTTGGAAGCCATAACCAAGCTCTTGAACAACAACATCACACCATGCTTGCCACTCCGCGGCACAATCACGGCCTCCGGGGACCTCGTCCCACTCTCATACATCGCGGGACTGCTCACCGGAAGGCCCAACTCGAAAGCAGTGGGGCCATCCGGGGAGCTACTCAATGCCAAGGAGGCATTCGAATTGGCGGGAATCACAACCGACTTCTTTGAATTGCAGCCTAAAGAAGGCCTCGCACTTGTCAACGGCACGGCAGTCGGCTCCGGCCTGGCGTCCATAGTTCTGTTCGAGGCGAACGTTCTTGCGGTGTTATCGGAAGTTCTTTCGGCTATCTTCGCCGAAGTGATGCAGGGGAAGCCAGAGTTCACCGATCACTTGACTCACAAGCTAAAGCACCACCCTGGCCAGATGGAAGCTGCTGCCATAATGGAACACATTTTGGATGGAAGCTCATACATGAAAGCCGCTAAGAAGCTTCACGAAACGGATCCATTGCAGAAGCCGAAGCAAGATCGCTACGCCCTTAGAACTTCACCTCAATGGCTTGGTCCTCTTGTGGAAGTGATTAGGTTTTCAACGAAATCGATCGAGAGAGAGATCAACTCTGTTAACGACAATCCGTTGATTGATGTGTCAAGAAACAAGGCATTGCATGGCGGTAACTTCCAAGGAACTCCGATCGGAGTCTCCATGGATAACACTCGTTTGGCATTGGCTTCAATTGGAAAGCTCATGTTCGCACAATTCTCAGAACTGGTCAACGATTTCTACAACAACGGCTTGCCTTCGAATCTCTCTGGTGCTAGGAATCCAAGCTTGGATTACGGTTTCAAAGGCGCGGAAATCGCCATGGCTTCTTACTGCTNNNNNNNNNNTCCGGTAACCAGCCATGTGCAGAGTGCTGAGCAGCACAACCAGGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAGACCAATGAATCTATTGAGATTCTCAAACTTATGTCTTCCACTTTCTTGATGGCGCTTTGCCAAGCCATTGATTTGAGGCATTTGGAGGAAAATTTGAAGAACTCTGTCAAGAACACTGTCAGCTTAGTCGCCAAGAGGACGCTTACCACCGGCGTTAACGGCGAGCTTCATCCTTCAAGATTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATAGGGAGCATGTTTTCGCCTACATTGATGATCCTTGCAGCGCGGTTTACCCGCTGATGCAGAAGCTTAGGCAAGTGCTTGTGGACCATGCTTTGGCCAATCCAGAGACTGAGAAGAACACAAACACCTCCATCTTCCAGAAGATCGCCACGTTCGAGGACGAGTTGAAGGCCGTGTTGCCAAAGGAGGTTGAGGGTGCTAGAATTGCTTATGAAAGTGGAAATTCAACCATCCCTAATAAGATCAAGGAATGCAGATCATACCCTCTTTATAGGTTTGTGAGGGAGGAATTGGGAACCGGTTTGCTCACCGGCGAAAAGGTCAGGTCGCCGGGCGAAGAATTTGACAAGGTATTCACCGCCATGTGCCAGGGGAAGATCATTGATCCTCTTCTTGAATGCCTTGGAGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAG 2193 0.5084 MEHITFTNGNGNGHLHHHHQNHNDDSFCLKTTTTTTTPTNVSDPLNWGVAAESLKGSHLDEVKRMVAEYRKPVVKLGGETLTISQVAAIAAHDQGVTVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGELLNAKEAFELAGITTDFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQMEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSGARNPSLDYGFKGAEIAMASYCXXXXPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLMALCQAIDLRHLEENLKNSVKNTVSLVAKRTLTTGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSAVYPLMQKLRQVLVDHALANPETEKNTNTSIFQKIATFEDELKAVLPKEVEGARIAYESGNSTIPNKIKECRSYPLYRFVREELGTGLLTGEKVRSPGEEFDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212105g00001 730 PANTHER HISTIDINE AMMONIA-LYASE 36 730 IPR001106 -
Stsc212105g00001 730 SUPERFAMILY L-aspartase-like 43 730 IPR008948 GO:0003824
Stsc212105g00001 730 Gene3D Fumarase/aspartase (Central domain) 281 725 - -
Stsc212105g00001 730 Gene3D - 34 280 IPR024083 -
Stsc212105g00001 730 NCBIfam phenylalanine ammonia-lyase 43 719 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc212105g00001 730 FunFam Phenylalanine ammonia-lyase 34 280 - -
Stsc212105g00001 730 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 216 232 IPR022313 GO:0016841
Stsc212105g00001 730 Pfam Aromatic amino acid lyase 81 551 IPR001106 -
Stsc212105g00001 730 CDD PAL-HAL 79 540 IPR001106 -
Stsc212105g00001 730 MobiDBLite consensus disorder prediction 1 23 - -
Stsc212105g00001 730 Gene3D - 543 664 IPR023144 -
Stsc212105g00001 730 FunFam Phenylalanine ammonia-lyase 543 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212105g00001 Stsc-Chr212105 7052 11691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212105g00001 24 730 Monolignol Biosynthesis Gene Families AT2G37040 81.857 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212105g00001 K10775 - gmx:100811101 1271.53