Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212099g00002 ATGGCAAAGCAAAAGAACGTTACTCTTCATGAAAACTCGGATGATGAAGAACCGCAGGTTCCCGTGACTCAGCCAGAGGAAGAAGAAGATACCAGCGAGGATGAGGAAACAACTTCCTCCGACGAAGAAGACGACGAAGGAGAAGGTGAACGGCATGAGATCGTTGTCAGGAAGCCTCAGCAGCAAATCAGTTCCAAACCCTCGTCTTCCTCTTCTGAATTCGACTCGGATTCTGAGCCCGAGCCTCAGCCCGAGCCGCAGAAAGCTAAACCCTCTTCAAAGGCGAAGTCTCGATCTTCAACGCCAGCTAGTCAAGCCAAATCTGCTTCATTGAAGCGCGGAGCCGAGAACAGCAACGAACACTCAACCCAGTCAAAACGCGGGAAGAAGGCTGCGGAGGATCATGCAGCTGGCTCTGATGAAGAGGATCAGAAGAAATCGCGCGACGAGTCCAAATCATTGTTTCAGAGGGTTTTCAGCGAGAAAGATGAGATAGGTATCTTGAAGGGCATGACTGAGTTCACCTCCAAAACAGGGAAGGATCCGCATAAATGCTCTGATGAATTCTACGAATTTATGAAGGGATCCAAGTTGATTAGCTCCAATGCATCATGCAACCAATTGAAGGATAAGATCCGCAGGCTAAAGAAGAAGTTTGAGAACATTCTGAAGAAAATGAAGAACGGAAAAGGGGCGACCTTATCAAAGCCGCATGAGTTGGAAGCCTTCAATTTGTCAAAGAATATCTGGGGCAGTGCCGGGGGCGGTGGTGGCGGCAGCGGCGAAGCAGGGAGGAATGAAACTTCCAAAACTGTTAAGGTTAATAATGAGAAGGCGGTGAAGAGTACCCCCAAGAAGGCGATAGTGCCCCAATCTAATGGGAAACCTGAAGTGAAGTCCAAACTGAATTCTGAAGTTTTGAATTTAAATGGAGGTAAAGAGGTGGATAAATTGCCTGAGACTAGTTTAGCTTTGACTTCATTGATGAGGTATGATGGGTCCTTTGGTAAGACTTACGGAAAAGACTATATTAGGAATGGATTAGAGAAACTTGGAGCCTCGAAGAGGGAAGAGTTAGAGGGCAGGTGGAGGAAGATGCAAGAAGCTGAAAATGAATTGTACGCCCAGATAGCAGAATTCTATGCAGAACAAATTAAGTTGATATTTCAAGCAAATAAATCGTCCTCCTAG 1191 0.4635 MAKQKNVTLHENSDDEEPQVPVTQPEEEEDTSEDEETTSSDEEDDEGEGERHEIVVRKPQQQISSKPSSSSSEFDSDSEPEPQPEPQKAKPSSKAKSRSSTPASQAKSASLKRGAENSNEHSTQSKRGKKAAEDHAAGSDEEDQKKSRDESKSLFQRVFSEKDEIGILKGMTEFTSKTGKDPHKCSDEFYEFMKGSKLISSNASCNQLKDKIRRLKKKFENILKKMKNGKGATLSKPHELEAFNLSKNIWGSAGGGGGGSGEAGRNETSKTVKVNNEKAVKSTPKKAIVPQSNGKPEVKSKLNSEVLNLNGGKEVDKLPETSLALTSLMRYDGSFGKTYGKDYIRNGLEKLGASKREELEGRWRKMQEAENELYAQIAEFYAEQIKLIFQANKSSS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 119 157 - -
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 20 49 - -
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 93 118 - -
Stsc212099g00002 396 PANTHER BNAANNG10740D PROTEIN-RELATED 27 390 IPR007592 GO:0006355
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 264 278 - -
Stsc212099g00002 396 Coils Coil 198 225 - -
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 1 157 - -
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 58 77 - -
Stsc212099g00002 396 MobiDBLite consensus disorder prediction 254 297 - -
Stsc212099g00002 396 Pfam Protein of unknown function, DUF573 155 251 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212099g00002 Stsc-Chr212099 8042 10446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212099g00002 139 394 GeBP Transcription Factor Family AT4G25210 35.206 2.60e-25 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Stsc212099g00002 DUF573 8.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212099g00002 - - adu:107494693 359.762