Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212095g00004 ATGAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTCACGGATTCCATGGACCAACGGGATTCTTACAACTCAAATTCCTCCCCTGAGCCTTGCATCACCACCGTTGATCACGACCAATCTTCCCTTCTTGGAGGTAACAATTCCCCTCTTTTGCCTCCCGTGGAAGTGGCCGCTACCACGGGGAGACGAAAGCGGAGGCGTACGAAGAGCGTGAAGAACAAGGAGGAAATAGAGAACCAAAGGATGACCCACATTGCAGTTGAGCGCAACCGAAGGAAACAGATGAATGAGTACCTGGCTGTACTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCATCTATTATTGGTGGAGCAATTAACTTTGTGAAGGAGCTAGAACAGCTTCTACAGTGCATGAACGGCCAAAAGAAAAGAAAACAAGAACACAACAATACTGTGCCATTTGCTGAGTTCTTCATGTTCCCTCAGTACTCAACACATGCTACTCGTAATTGCCACAATAACAGCACGGTGTACCCTCCCCCGTGCGGCGAGGCGGTGATGGAGAAGATGTCGTCGCAGTCAGCCGCCGTCGACATAGAAGTGTCCTTGGTGGATAGGCATGCTAACATGAAGATACTATCCAAGAAGCAACATGGTTTGCTTGTGAAGATGGTTATTGGGCTACAAAATTTGGGTTTCACCATTCTTCACCTTAATGTTACAACCGCTAGTGATATGGTCCTTACTTCAGTTAGTGTTAAGGTAGAGGAAGGGAGTCAGCTGAATACAGTGGATGAAATCGCCGCTTCTGTGAACGAACTATTACGCACAATCCATGAAGAAGTTCCTCTCTGCGCTGATCATCAATCATAA 900 0.4389 MNNNNNNNNNNNNNNNNNNNNVTDSMDQRDSYNSNSSPEPCITTVDHDQSSLLGGNNSPLLPPVEVAATTGRRKRRRTKSVKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMNGQKKRKQEHNNTVPFAEFFMFPQYSTHATRNCHNNSTVYPPPCGEAVMEKMSSQSAAVDIEVSLVDRHANMKILSKKQHGLLVKMVIGLQNLGFTILHLNVTTASDMVLTSVSVKVEEGSQLNTVDEIAASVNELLRTIHEEVPLCADHQS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212095g00004 299 CDD bHLH_AtFAMA_like 92 163 - -
Stsc212095g00004 299 SMART finulus 95 146 IPR011598 GO:0046983
Stsc212095g00004 299 MobiDBLite consensus disorder prediction 1 63 - -
Stsc212095g00004 299 Coils Coil 137 157 - -
Stsc212095g00004 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 159 IPR036638 GO:0046983
Stsc212095g00004 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Stsc212095g00004 299 PANTHER MAX DIMERIZATION, MAD 16 290 - -
Stsc212095g00004 299 Gene3D - 79 162 IPR036638 GO:0046983
Stsc212095g00004 299 Pfam Helix-loop-helix DNA-binding domain 90 141 IPR011598 GO:0046983
Stsc212095g00004 299 MobiDBLite consensus disorder prediction 1 57 - -
Stsc212095g00004 299 FunFam Basic helix-loop-helix transcription factor 80 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212095g00004 Stsc-Chr212095 25789 28781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212095g00004 16 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.145 1.03e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212095g00004 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212095g00004 - - ccaj:109795426 326.25