Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212082g00003 ATGGGCGGTATAGGTAAAACAACTATTGCTGCTGCAATTTTCAAAGAGTTCTCTCCCAAATTTGAGGGTAGTTGTTTCTTAGAAAATGTAAGAGAAGAATCATCAAGTCATGGACTCAATCACATATTCAAGAAACTCCTTTCTGAGTTGCTGGAGGAAAAAGTTCATATCAGCACTCACAAAGTAATATCCACAGCTATCATACGCAGGTTAAAGCGCAAGAAAGTTTTCATTGTATTAGATGATGTGCATACTTCTGAACTCTTAGAAACTTTGCTTGGAGTTGGACATGATTATTTAGGATTTGGCAGCAAAGTGATTGTGACAACCAGAGATAAACATGTGCTTCAGGGTAGAGTCATTGTAGATCACATTCATGAAGTCAAAGAAATGAATTTTGAGAACTCCCTCAAACTTTTCAGCCTAAATGCCTTCAACAAGCTTCATCCTCCAGAAGATGAATACTGGGATCTATCAATGGTAGCAGTTGAATATGCAAGTGGCATCCCTTTAGCTTTGAAAGTTTTGGGATCTTTCCTGCGATCCAAAAGTTACAATGAATGGGATAGTGCATTGGCAAAACTGAAAGCAATTCCCAATGGAGATATTCATCAGCAGGTACTGAGATGGAGTTTTAATGAACTGGATCATGCAGAAAAAAATATATTTCTTGACATTGCATGTTTTTTCAAAGGGCAAACCAGATACAAAGTAACAAGGTTATTGAATGCCTGTGGTTTCTTTGCGGAGATAGGGATAAGAACCCTTTTAGACAAGGCTTTGATAAGAATAACTATCAATGATAGTATACAAATGCATGATTTGATACAGGAAATGGGTCACAAAATTGTTAATGAAGAATCCATTAAGAACCCTGGAGGGCGTAGCAGGTTGTGGAAATCTGAAGAAGTTCGAGACATATTGAAAAATGACAAAGGGACCGATGCAATTGAGACAATATTCTTGGATATGACTCAAGACACGGACCTATGTATAAGTTCCCAGGCATTCAGGAAGATGCCAAACCTAAGGTTACTTGCTTTTGCAGATAATAAAGCTTTTCAGAGGAAGAAGAAAAAGAAGAGAACAAATGAGACATTGGCCCTTCCAACAGATCTCGAATTGCCTAATAACTTGAGATATATTCAGTGGGATGGATGTCCATTGAAATCTCTGACAACTAGTTGGTGGCCTACTAAGCTTGTTGAACTTTCCATGCCATTCAGCAATGTTGAAAAACTTTGGGATGGGGAACAGAATCTACCAAGTTTAGAGATAATTAACCTTCAATGTTCCAGACGCATGAGAGAGTGTCCAAACTTGTCAGGTGCCCCAAATCTAAAACGAGTAAATCTCACTGGGTGTGAAAGCTTGACTGATGTTCATCCTTCTGTTTTCCGTCTTCCAAAGCTTCAAAGCTTATGGGTATATGAATGCAAAGCACTTACATGCCTATCAAGTGAATATTGTTCACCCTCTCTTCAATCAATTGTTGCTTATAATTGCCCTAATCTGCAAGAATTCTCAGTCCCAATGGTAGGTGATCATTCTGGAATTCATTTGCATCTGAGGTCAACTGCTTTGAAAAAACTACCATCATCAATTTTTCATCTTAAGGATCTTGGACACTTCTCCTTTTCAATTAGTGAGAGCTTGATGGATCTTCCTACAAATTTTGCATTTCAAATCATGCTTTCAGACCCTGTTGAACACAAATATGATACCGCTGTCACCTTACATAAAGTACTACCTAGCCCTGCCTTTCAATCTGTAGTGCGTCTAATCTTTGATCATTGTTGTAGCTTAACTGAAATCCCAGACAGCATCTCTTTGTTATCATCATTAGCGCACTTAAACCTATATCATTGCACTAATGTCAGTACATTGTCCAAAAGAATTAAGCTCCTTCCAAGGCTTCAAGTTCTTAACATTTTTCAATGTCATATGCTACAACTTTTACCAATTCTTCCTCCTTCCCTTAAACGCCTTAGGGTCTGGGATTGCAATCTTCTCAAGACGGTGTTGACTACAATAAGCAAACCACCCAGAAAAGATGAGGCTACATTTTTGTTCCTAAACTGCAATAATTTGGATGAGGACTCGTGTAGTATCATCTTGAAAGATGCTATTCTTAGGACAGAACTTGGGGTAAAAGAAACTGAATGTGGAATCCAAGAAGAAGAAATCTTTGACCTTGATCGTGATTGCTATGCAGATTTCAGTGAGATTTGTTATTTATTGCCAGTTAGAGGCAATAATATTTATGACTTGTTTGATGTCCACTCTGCTGAAGCTTATTCGTTTAGCGTTGAACTGCCTCGAGATTCCAATCTAGTTGGTTTCCTCTTCTTCATTGTTCTTTCTGAAGACCAATGGAGTTGCATAGCAGAACACACATGGTACGGTGTAAGTGACCTCTTAGACTTTGGGTGTGATTGTTACTTGGAAACAAGTTGGGGTGAAAAGGTTCATGCAGAAAGCTTCTCCTTGTTACAATGGCACTGGGATCAACTCTACCATCATGTTGATATTACATCAGATCATGTATTATTATGGTATGACGAGGAATGTTGTAAGAAGATAATGGAACCAATTAGAGGGACAGAAGGAAAAGGCATCAATGATGAAGAGAAGGGGTCCACTGGCAATAATGCAAATCTTACTCTTGAATTCTTTGCTGGAGTGTTGAATAAATTGGACGCAGTGATACGAGAGTGTGGCATTCGTTGGATATATCAAAATGTGGAGGAAGAAGAAGAAGGATCAAGAGGCCGCAAATCCAAGAGAACTAACGAAGAAGCCGATGAGGAAGATGGTTCTGAATCTAATGAGCAAGAAGAATCAATTCCTCCAACAAAAAAGCTAAAGCAAAGTTTGCTAGAACCTCCCTTGATCCTTGAAGGAGAAGAAGTAGTAGAGGACTTGAGGCAAAAACTTGAAGAAATTCTGCATATTGGATTTGATATATGGAGATTCATGTAG 2982 0.3853 MGGIGKTTIAAAIFKEFSPKFEGSCFLENVREESSSHGLNHIFKKLLSELLEEKVHISTHKVISTAIIRRLKRKKVFIVLDDVHTSELLETLLGVGHDYLGFGSKVIVTTRDKHVLQGRVIVDHIHEVKEMNFENSLKLFSLNAFNKLHPPEDEYWDLSMVAVEYASGIPLALKVLGSFLRSKSYNEWDSALAKLKAIPNGDIHQQVLRWSFNELDHAEKNIFLDIACFFKGQTRYKVTRLLNACGFFAEIGIRTLLDKALIRITINDSIQMHDLIQEMGHKIVNEESIKNPGGRSRLWKSEEVRDILKNDKGTDAIETIFLDMTQDTDLCISSQAFRKMPNLRLLAFADNKAFQRKKKKKRTNETLALPTDLELPNNLRYIQWDGCPLKSLTTSWWPTKLVELSMPFSNVEKLWDGEQNLPSLEIINLQCSRRMRECPNLSGAPNLKRVNLTGCESLTDVHPSVFRLPKLQSLWVYECKALTCLSSEYCSPSLQSIVAYNCPNLQEFSVPMVGDHSGIHLHLRSTALKKLPSSIFHLKDLGHFSFSISESLMDLPTNFAFQIMLSDPVEHKYDTAVTLHKVLPSPAFQSVVRLIFDHCCSLTEIPDSISLLSSLAHLNLYHCTNVSTLSKRIKLLPRLQVLNIFQCHMLQLLPILPPSLKRLRVWDCNLLKTVLTTISKPPRKDEATFLFLNCNNLDEDSCSIILKDAILRTELGVKETECGIQEEEIFDLDRDCYADFSEICYLLPVRGNNIYDLFDVHSAEAYSFSVELPRDSNLVGFLFFIVLSEDQWSCIAEHTWYGVSDLLDFGCDCYLETSWGEKVHAESFSLLQWHWDQLYHHVDITSDHVLLWYDEECCKKIMEPIRGTEGKGINDEEKGSTGNNANLTLEFFAGVLNKLDAVIRECGIRWIYQNVEEEEEGSRGRKSKRTNEEADEEDGSESNEQEESIPPTKKLKQSLLEPPLILEGEEVVEDLRQKLEEILHIGFDIWRFM 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212082g00003 993 Gene3D - 1 122 IPR027417 -
Stsc212082g00003 993 PRINTS Disease resistance protein signature 70 84 - -
Stsc212082g00003 993 PRINTS Disease resistance protein signature 166 180 - -
Stsc212082g00003 993 PRINTS Disease resistance protein signature 419 435 - -
Stsc212082g00003 993 MobiDBLite consensus disorder prediction 920 956 - -
Stsc212082g00003 993 Pfam Leucine Rich Repeat 400 419 IPR011713 -
Stsc212082g00003 993 SUPERFAMILY L domain-like 320 697 - -
Stsc212082g00003 993 Gene3D - 131 216 IPR042197 -
Stsc212082g00003 993 Gene3D Ribonuclease Inhibitor 519 704 IPR032675 -
Stsc212082g00003 993 Gene3D Ribonuclease Inhibitor 296 513 IPR032675 -
Stsc212082g00003 993 MobiDBLite consensus disorder prediction 920 935 - -
Stsc212082g00003 993 Pfam NB-ARC domain 1 197 IPR002182 GO:0043531
Stsc212082g00003 993 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 226 IPR027417 -
Stsc212082g00003 993 SUPERFAMILY "Winged helix" DNA-binding domain 206 309 IPR036390 -
Stsc212082g00003 993 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 558 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212082g00003 Stsc-Chr212082 18772 22224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212082g00003 3 618 WRKY Transcription Factor Family AT4G12020 33.439 3.77e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212082g00003 - - adu:107464293 1187.17