Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212074g00004 ATGGCTTATGCAGCTACATACAGAGTTGGAGATGAAGATGGTTGGACTTTTAGTGTTCAAGACTGGCCTAACGGAAAGCACTTTATGGCGGGTGATATACTTGTATTCAATTATGGTGCCGAAGTGCATAACGTGGTTGAAGTGAACCAGTGGGCTTATGAGAATTGCGACGATTCTAAGATCCGTGGAAGGAAACATACGACAGGGAATGATCATATTCAGCTAGTCAAAGGAATGAACTACTTCCTTTGTAGTCATCCTGATCACTGTAGTAAGGGAGGGATGAGAATTGCAGTCAATGCTGCATGA 309 0.4304 MAYAATYRVGDEDGWTFSVQDWPNGKHFMAGDILVFNYGAEVHNVVEVNQWAYENCDDSKIRGRKHTTGNDHIQLVKGMNYFLCSHPDHCSKGGMRIAVNAA 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212074g00004 102 PANTHER BLUE COPPER PROTEIN 4 100 IPR039391 GO:0009055
Stsc212074g00004 102 SUPERFAMILY Cupredoxins 5 101 IPR008972 -
Stsc212074g00004 102 ProSiteProfiles Phytocyanin domain profile. 5 102 IPR003245 GO:0009055
Stsc212074g00004 102 Pfam Plastocyanin-like domain 16 93 IPR003245 GO:0009055
Stsc212074g00004 102 Gene3D - 5 101 IPR008972 -
Stsc212074g00004 102 CDD Plantacyanin 5 101 IPR041844 -
Stsc212074g00004 102 FunFam basic blue protein-like 5 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212074g00004 Stsc-Chr212074 18606 20755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212074g00004 6 101 Phytocyanin Superfamily AT1G17800 38.384 5.30e-18 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212074g00004 - - gmx:100818617 120.168