Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212067g00006 ATGAACAACCGCGCGTCCAAGGAGCTCAAGGTTTCGTTCGAAGAACCCGCGCCACCGAATTTGACGGTGGAGATGACAAATAACTCCGATGCCGTGAGAAGAAGACATAGCAGGGATTTGTCGTCGACGATGGGAAACTTCCAACGGCCACCGCAGCCTCCTGGCGGATCTCCGTCTCGCGCCGGCATCGGTGGTGGTAACGGTAACGACGACGGCGAGGTTGTGAGGTGCACCTCTAACGGTTCCGTTGAGAGAACCCTTTCCATGCAGAGCAGAAAATCAACATTGTTGAAGGCCAAAACCCGGTCCAGGTTGATGGACCCGCCCGATGAACCCGAAAGAAAATCGGGTCGGATCATGAAGTCGGGTCAGCTGTTCTCAGGGTTGCTTGGGAAGAAGAAGGGTGGTGATGACGACGATGACGATGATGATCCCTTTTTGGAAGAGGATCTTCCTGACAAGTATAAAAACACTCACTTTAGTTTATGGGTTTTGATTGAATGGTTGGTGTTGATTTTGATCATTGCTGCACTGGTTACAACTCTGAGTGTTCCTTTCTTGAGGGAGAAGAATCTTTGGCAGCTGAAGCTGTGGAAATGGGAGGTTATGATTCTTGTGTTGATATGTGGAAGGTTGGTGTCTGGTTGGCTTATCAGAGTGGCTGTGTTCTGCATTGAGAGGAACTTCCTTTTGAGGAAGAGGGTTCTGTATTTTGTGTATGGTGTGAAGCATGCTGTTCAGAATTGTGTTTGGTTAGGGCTTGTTTTGATAGCTTGGCACTTCTTGTTTGATCAGAAGGTTCAGAGAGAGACTCATAGTAATTTCCTTGAGTATGTTACCAAGATTTTGGTGTGCTTCTTGGTTGGTACTCTTGTTTGGTTGGTTAAGACACTTATGGTTAAGGTTCTGGCCTCTAGCTTCCATGTTAGCACATACTTTGATAGGATTCAAGAGTCACTGTTCAATCAGTTTGTGATTGAGACACTCTCGGGGCCGCCTTTGGTCGAGCTTCAGCAGATTGAGGATGAGGAGCAAAAGATTCTTGAAGACGTTGAGAAGCTACAGAAAGCCGGAGTTACCATACCTCCTGAGCTGAGGGCTACTGCCTTCTCGACGAACAAGAGTGGGAAGTTGAGGAGTGGGATGCTCCAGAAAAGTCCCAGGATGGTTAGTGGACGATTCTCGAGACCTCTCTCCAAGAAGTCTGAGGAGGGGAATGGTGGGATAACTATTGATCACCTGCATAAGCTGAATCCGAACAATGTCTCGGCCTGGAATATGAAAAGGCTAATCAATATGGTTCGGCACGGGGCTCTAACTACATTAGATGAACAAATACTTGACTCGGCCCATGATGATGAGAACGCCACGCAGATTAGAAGCGAAAATGAGGCAAAAGCAGCAGCCAAGAAAATTTTTCAGAATGTTGCTTGCGGTGGCAGGTTCATATACAAGAAGGACTTGCTGCGATTTATGCAAGAAGATGAAGTTGTGAAAACCTTGAGTCTCTTTGAAGGTGCAACTGAGACCGGAAGAATAAGCAAATCATCCTTGAAGAACTGGGTGGTCAATGCCTTTAGAGAGAGGAGAGCACTTGCGTTGACATTGAATGATACGAAAACGGCGGTGAACAAACTTCATCGAATGCTCAATTTCTTAGTTGCCATTATTATCCTAGTTATCTGGCTCTTGATACTGGGAATCGCCACCACCAAGTTTCTCCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCATTCATATTTGGAAACACCTGCAAGACCATATTTGAAGCCATTATTTTCTTATTTGTAATGCACCCGTTCGACGTTGGAGATAGATGCGAAATTGATGGAGTCCAGATGGTCGTAGAGGAAATGAACATACTGACCACCGTATTTCTGAGGTATGATAATCTAAAGATAATGATCCCTAACAGTGTCCTTGCTACAAAGGCAATACACAACTTCTACCGCAGTCCGGACATGGGAGATGCTCTCGAATTCCTTATTCATGTGGCTACACCATTGGAGAAGTTTGCTCAAATTAAGCACAGAATACAGAGTTACATTGATAACAAGAAGGAGCACTGGTATCCATCACCATTTATAGTCTTCAAGGATTGTGAAAACTTAAACATGATTCGGATAGCGGTTTGGCCAACCCACAGGATGAACTTCCAAGACATGGGAGAGAGATTCATAAGGAGGTCGTTGTTGATCGATGAGATAGTCAAGATTTTCCGGGAGCTTGACATACAATACCGGCTGCAGCCGATCGATATTAGTATTAGAAGCATGCCTACCACTTCTGAGCGTCTTCCACCAAGTTGGTCAACAATCACAAGTTGA 2349 0.4551 MNNRASKELKVSFEEPAPPNLTVEMTNNSDAVRRRHSRDLSSTMGNFQRPPQPPGGSPSRAGIGGGNGNDDGEVVRCTSNGSVERTLSMQSRKSTLLKAKTRSRLMDPPDEPERKSGRIMKSGQLFSGLLGKKKGGDDDDDDDDPFLEEDLPDKYKNTHFSLWVLIEWLVLILIIAALVTTLSVPFLREKNLWQLKLWKWEVMILVLICGRLVSGWLIRVAVFCIERNFLLRKRVLYFVYGVKHAVQNCVWLGLVLIAWHFLFDQKVQRETHSNFLEYVTKILVCFLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVELQQIEDEEQKILEDVEKLQKAGVTIPPELRATAFSTNKSGKLRSGMLQKSPRMVSGRFSRPLSKKSEEGNGGITIDHLHKLNPNNVSAWNMKRLINMVRHGALTTLDEQILDSAHDDENATQIRSENEAKAAAKKIFQNVACGGRFIYKKDLLRFMQEDEVVKTLSLFEGATETGRISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILGIATTKFLLFVSSQLVLVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRYDNLKIMIPNSVLATKAIHNFYRSPDMGDALEFLIHVATPLEKFAQIKHRIQSYIDNKKEHWYPSPFIVFKDCENLNMIRIAVWPTHRMNFQDMGERFIRRSLLIDEIVKIFRELDIQYRLQPIDISIRSMPTTSERLPPSWSTITS 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212067g00006 782 PIRSF Memb_At2g17000 2 782 IPR016688 -
Stsc212067g00006 782 MobiDBLite consensus disorder prediction 103 118 - -
Stsc212067g00006 782 Pfam Mechanosensitive ion channel 549 753 IPR006685 GO:0016020|GO:0055085
Stsc212067g00006 782 MobiDBLite consensus disorder prediction 1 118 - -
Stsc212067g00006 782 FunFam Predicted mechanosensitive ion channel 607 656 - -
Stsc212067g00006 782 SUPERFAMILY Sm-like ribonucleoproteins 597 656 IPR010920 -
Stsc212067g00006 782 Gene3D - 607 656 IPR023408 -
Stsc212067g00006 782 Coils Coil 334 357 - -
Stsc212067g00006 782 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 50 777 IPR016688 -
Stsc212067g00006 782 MobiDBLite consensus disorder prediction 73 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212067g00006 Stsc-Chr212067 28472 31899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212067g00006 53 782 Mechanosensitive Ion Channel Family AT1G78610 62.719 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212067g00006 K22048 - gmx:102665658 1152.5