Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212059g00004 ATGCACTTTGCTTGGTTACTTAAACATCAATTGTTACAAATCATCGTCATCATCATAATAAGTATTATCACCCTCACCAAAGTTGGTTGCTTCGAATTCAACTTCCCCACATTCCAACCACAAGATGAATCTCAGTTACTGCTAAGCAAAAACTCAAAAATCTACCTTGATGCCATCCAAGTAACCCCTGATATCCGTGGCGAAATTCGCCATTATTCAGGACGTGCATTCTACAATAAACCATACCGGTTATGGAGCAAGAACAAGAAACAAATAGTTGCAAGTTTCAACACCACTTTTGTTCTTAACATAGATCCTCAAACTTCCCCTGGTGGAGAAGGGTTGGCCTTCATCAACAGTTCGGGAGAGTGGCTAGGAATTGTGAATGCCACAACCAATGGAACTTCTCAAGCTGGGATTCTTGCTGTGGAATTTGACAAAAGGAAAAGTTTTACAGAAGATGGTCCTGATAACCACGTTGGGATTAGCATAATAAACAGTGTCTACTCCATCAAACAGGAACCGTTGTTAATCAAAGGGATTAATATTTCATCAGGTATTAATGTAACTATAAGAATTCAGTATGTTAATGATGTTATATCCGTTTTTGGTTCCATGAGTGCAAGTACTTTGCCAATGGAGATGCTTTTGGTATCTCCATCGCTTAATCTTTCTTCCTACCTTGAGGAAGAAGTTTATCTTGGATTCTCTGCTTCAACAAGTAACTACACCGAGCTGAATTGTGTAAGATCATGGGAGTTCAACGGTGTAGATATTGTTCATGATAACAAGAACCTGTTGTGGATTTGGATAACTGTTGCAACCGTGATTGTTATTATGATTGGTGGGGTGGTGTTTTTCTTGATTTGGCGAAGGAAACATGGTGTAGGGACTCTGGTGGATGCATACCCGAGGATAGAGGATCAGATTCAGCACTCATCCATGGCTCCAAAGAAGTTCCGGTTAAAGGAAATTAGAAAAGCAACAGGTGGATTCAGCCTTCAAAACAAGCTTGCTGAAGGTGGTTTCGGAACAGTTTATAAGGGACTACTCGAAAACAAGGAGATAGCTGTGAAGAGTCATTCGAAGGATTCGCGCCAAGGGAAGCAAGAATTCGTAGCAGAAGTCACAACAATTGGAGGTCTCCACCACAAGAATTTGGTGAAACTGATTGGCATCGGAGTATCTCTCCACAATGGTTGTGAGAAGAGGGTGCTTCATAGAGACATCAAGGCCAGCAACATAATGTTGGATTCGGAATTCAATGCTAAGTTAGGAGATTTCGGATTGGCGCGAACTATTCAAGAGAAAAATGAAACTCATCATTCCACAAAGGAGATTGCAGGGACGCCAGGGTACATGGCCCCGGAAACATTGCATTCTTGTGTTGGAAGTTGTGTGCGGAAGAAGGCCGGGAATGTGAACGGACAGGATGATTACAAGAACAGCATTGTGTATTGGGTTTGGGAGCTTCATGGGAAGGGGAGAATAGTGAGTGCTTTGGACAAAAGGATAAGTAATGAAGAGATTAAGGAAGAAGAAGTTTCTAGTGTTCTTGTGTTGGGGTTGGCTTGTTGCCATCCAAACCCGCACCGTAGGCCTTCAATGAGAACTATTCTGCAAGTTTTGAACAAGGAAGCAACTCCGCCAATGGTGCGTCAAGAGAGACCTGCTTTTGTGTGGCCTGCTATGCCTCCATCTTTTAACGAAGGTGTTGATACTTATTCAGTCCTCAACGGACAAGTCACTCCCATATTCACTGAAATAAGTGGTAGATGA 1779 0.4221 MHFAWLLKHQLLQIIVIIIISIITLTKVGCFEFNFPTFQPQDESQLLLSKNSKIYLDAIQVTPDIRGEIRHYSGRAFYNKPYRLWSKNKKQIVASFNTTFVLNIDPQTSPGGEGLAFINSSGEWLGIVNATTNGTSQAGILAVEFDKRKSFTEDGPDNHVGISIINSVYSIKQEPLLIKGINISSGINVTIRIQYVNDVISVFGSMSASTLPMEMLLVSPSLNLSSYLEEEVYLGFSASTSNYTELNCVRSWEFNGVDIVHDNKNLLWIWITVATVIVIMIGGVVFFLIWRRKHGVGTLVDAYPRIEDQIQHSSMAPKKFRLKEIRKATGGFSLQNKLAEGGFGTVYKGLLENKEIAVKSHSKDSRQGKQEFVAEVTTIGGLHHKNLVKLIGIGVSLHNGCEKRVLHRDIKASNIMLDSEFNAKLGDFGLARTIQEKNETHHSTKEIAGTPGYMAPETLHSCVGSCVRKKAGNVNGQDDYKNSIVYWVWELHGKGRIVSALDKRISNEEIKEEEVSSVLVLGLACCHPNPHRRPSMRTILQVLNKEATPPMVRQERPAFVWPAMPPSFNEGVDTYSVLNGQVTPIFTEISGR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212059g00004 592 Pfam Legume lectin domain 32 258 IPR001220 GO:0030246
Stsc212059g00004 592 Gene3D Phosphorylase Kinase; domain 1 306 397 - -
Stsc212059g00004 592 Gene3D - 30 265 - -
Stsc212059g00004 592 Pfam Protein tyrosine and serine/threonine kinase 333 395 IPR001245 GO:0004672|GO:0006468
Stsc212059g00004 592 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 305 406 - -
Stsc212059g00004 592 FunFam Probable L-type lectin-domain containing receptor kinase S.5 30 263 - -
Stsc212059g00004 592 SUPERFAMILY Protein kinase-like (PK-like) 313 543 IPR011009 -
Stsc212059g00004 592 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 255 IPR013320 -
Stsc212059g00004 592 Pfam Protein kinase domain 402 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212059g00004 592 SMART serkin_6 332 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212059g00004 592 Gene3D Transferase(Phosphotransferase) domain 1 398 468 - -
Stsc212059g00004 592 Gene3D Transferase(Phosphotransferase) domain 1 469 556 - -
Stsc212059g00004 592 PANTHER - 60 392 - -
Stsc212059g00004 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Stsc212059g00004 592 CDD lectin_legume_LecRK_Arcelin_ConA 31 255 IPR001220 GO:0030246
Stsc212059g00004 592 ProSiteProfiles Protein kinase domain profile. 243 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212059g00004 Stsc-Chr212059 18923 20834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212059g00004 73 559 Receptor kinase-like Gene Family AT5G55830 30.413 5.50e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc212059g00004 Lectin_legB 5.9e-52 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212059g00004 - - gmx:100785031 766.918