Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212049g00002 ATGTTACATGTTGTTTCTGAGTCATCACTTCAAGAAAATGAAGAGAAACTTAAAGTCCACTTGCAGTTCCCACTCAGTGTAGAGAGAGATAAACTGGTATCACCAGAAACTTCAAGTCATTTGGAAGAACGTCCACCACAGCTACGAGTTGATTGGCAGGAGCATGAGCCTAAATATCAAAATTTACCCATTTCGGGAATGAGTCCTAGTGGAAAAGGCTTGACACATATTGGTAAAGAGAACATGCAACATGTCGGTCAAAACAATGTTCGGTTTGATGAACATGTTGAAGCTATATCACAACAGTGCATCAACTACCAACATGGTTTTTGCTCATCTTCACCCGATCTGCAAGGCAGTGAATGCAGTGTATCTGCAGCACCATTTAGCTCTCTAGAATCTCCAAGCAACTGGAGGGTTCAACCACATGGCGCACCATTAGACAGAACTGCTTTTGAGTATTCCATTAGGAGCCAAGATACATCATTGCACAAGCAATATGCAACACAAGGGGAAGGCAGTCAACTCTCCTTTGTCTCTTTCGAGTTACAGCCTACTGAGTCCCAAGCGAGCATGGAGTCTGTACTGCCTGTCTCTTATCCAGTCATGAGTGCTTCTTCTGTGAAAGAAGTTGTTATACCTCACGAGGATCCTAACTACAAAGAAGAAAACGCAGACATTAACAAAGAATCTTCCAGAAGCTTCAATGATTGTAGTTCCACAGGTCTTCGGTCATGCACCCAAGTTGCCTCAGATTTAGACAAAGAGGATGAAGTTGCATCAACATCTCCTACGCAGGAAAGGGTAGATCGCCTTGTAAACACTGACGGCGAAGACATCAATAAGCCTCCTGGTGATAATACAACTCCTGAAACAGAAGCTGAACTTTTTGGTTTACAGATTATTGAGAATATTGATCTTGAAGAATTGCAAGAGCTAGGATCTGGAACCTTTGGAACAGTTTATCTTGGAAAGTGGAGGGGAACAGATGTTGCAATTAAGAGGATTAAAAAAAGTAGTTGTTTCTCTGGTAGACTATCTGAGCAAGAGCGGATGACGAAAGATTTCTGGAGGGAGGCACAGATTCTATCCACTCTTCATCATCCAAATGTGGTAGCATTTTATGGTGTAGTTCCAAATGGCCCAGATGGAACATTGGCAACTGTAACAGAATACATGGTGCATGGATCACTAAGGAATGTTCTCGTGAAGAAGGAGAGAGTGCTTGACCGTCGCAAAAGGATCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGACTTGAAGTGTGATAATCTACTTGTTAATCTGGGGGATCCTGAGCGACCAGTATGTAAGGTTTCAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTATTTCGGGTGGTGTCAGAGGAACCCTTCCTTGGATGGCACCGGAATTGCTAGATGGTAACAATAGGGTATCTGAAAAGGTTGACGTTTTCTCATTTGGTATTGCAATGTGGGAGATCTTAACTGGGGAAGAGCCATATGCTAACATGCACTGTGGTGCTATAATAGGAGGTATTGTCAGTAATACGCTCAGGCCTTCTGTTCCAAAACGCTGCGATTCTGAGTGGAAGAAGCTTATGGAAGAGTGCTGGAGTCCTGATCCCGAAGCCAGGCCATCCTTCACAGAGATCAAAAGTAGGCTTCGAAACATGTCGGTTGCACTTCAAAATAAGCGGCATATCCGATGA 1755 0.4279 MLHVVSESSLQENEEKLKVHLQFPLSVERDKLVSPETSSHLEERPPQLRVDWQEHEPKYQNLPISGMSPSGKGLTHIGKENMQHVGQNNVRFDEHVEAISQQCINYQHGFCSSSPDLQGSECSVSAAPFSSLESPSNWRVQPHGAPLDRTAFEYSIRSQDTSLHKQYATQGEGSQLSFVSFELQPTESQASMESVLPVSYPVMSASSVKEVVIPHEDPNYKEENADINKESSRSFNDCSSTGLRSCTQVASDLDKEDEVASTSPTQERVDRLVNTDGEDINKPPGDNTTPETEAELFGLQIIENIDLEELQELGSGTFGTVYLGKWRGTDVAIKRIKKSSCFSGRLSEQERMTKDFWREAQILSTLHHPNVVAFYGVVPNGPDGTLATVTEYMVHGSLRNVLVKKERVLDRRKRIMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVSDFGLSRIKRNTLISGGVRGTLPWMAPELLDGNNRVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSVPKRCDSEWKKLMEECWSPDPEARPSFTEIKSRLRNMSVALQNKRHIR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212049g00002 584 Gene3D Transferase(Phosphotransferase) domain 1 396 583 - -
Stsc212049g00002 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Stsc212049g00002 584 SUPERFAMILY Protein kinase-like (PK-like) 306 569 IPR011009 -
Stsc212049g00002 584 ProSitePatterns Protein kinases ATP-binding region signature. 313 338 IPR017441 GO:0005524
Stsc212049g00002 584 PANTHER SERINE-THREONINE PROTEIN KINASE 173 571 - -
Stsc212049g00002 584 Pfam Protein tyrosine and serine/threonine kinase 309 570 IPR001245 GO:0004672|GO:0006468
Stsc212049g00002 584 CDD STKc_MAP3K-like 313 570 - -
Stsc212049g00002 584 SMART serkin_6 307 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212049g00002 584 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 300 395 - -
Stsc212049g00002 584 ProSiteProfiles Protein kinase domain profile. 307 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212049g00002 584 PRINTS Tyrosine kinase catalytic domain signature 427 445 IPR001245 GO:0004672|GO:0006468
Stsc212049g00002 584 PRINTS Tyrosine kinase catalytic domain signature 390 403 IPR001245 GO:0004672|GO:0006468
Stsc212049g00002 584 PRINTS Tyrosine kinase catalytic domain signature 497 519 IPR001245 GO:0004672|GO:0006468
Stsc212049g00002 584 PRINTS Tyrosine kinase catalytic domain signature 541 563 IPR001245 GO:0004672|GO:0006468
Stsc212049g00002 584 Gene3D Phosphorylase Kinase; domain 1 301 395 - -
Stsc212049g00002 584 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 396 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212049g00002 Stsc-Chr212049 3716 6937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212049g00002 298 576 MAP Kinase Kinase Kinase AT1G16270 80.357 1.69e-159 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Stsc212049g00002 PK_Tyr_Ser-Thr 6.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212049g00002 - - aip:107619554 1041.57