Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212044g00002 ATGGCACAAACGCTAGCAATGCCCGTAGCTCCCTCCCTCGCCCTAATCTCAAACGCTAAACCTCTTTCGAGAACCGTCAACTTCCCCGTTCTCAACCCTCCCAAGGTGAGAGGGTTAAGCATAGAGTGCGCTCGTGTTGGAGGAGTTGAGATTCCGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCGGAAGGACCAGAGCTCGCCAGATTCTGTGCGATATAAGCATGGATAACAAGGTCACTAAGGAGCTCAGCGAGGAGGAACTCATCATTCTTAGGGATGAAGTCTCCAAATACGTCATTGAAGGCGATTTGAGGAGGTTTAATGCGCTGAATATAAGGAGATTGAAGGAGATTCAGTGCTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCCGAGGACAGCGCACAAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTAA 492 0.4817 MAQTLAMPVAPSLALISNAKPLSRTVNFPVLNPPKVRGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRTRARQILCDISMDNKVTKELSEEELIILRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212044g00002 163 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 39 161 - -
Stsc212044g00002 163 ProSiteProfiles Ribosomal protein S13 family profile. 46 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc212044g00002 163 NCBIfam 30S ribosomal protein S13 45 154 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc212044g00002 163 Gene3D - 44 112 - -
Stsc212044g00002 163 Hamap 30S ribosomal protein S13 [rpsM]. 43 159 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc212044g00002 163 FunFam 30S ribosomal protein S13 113 162 - -
Stsc212044g00002 163 FunFam 30S ribosomal protein S13 39 112 - -
Stsc212044g00002 163 SUPERFAMILY S13-like H2TH domain 44 155 IPR010979 GO:0003676
Stsc212044g00002 163 ProSitePatterns Ribosomal protein S13 signature. 128 141 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc212044g00002 163 Gene3D 30s ribosomal protein s13, domain 2 113 163 IPR027437 -
Stsc212044g00002 163 Pfam Ribosomal protein S13/S18 45 149 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212044g00002 Stsc-Chr212044 22470 23333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212044g00002 45 161 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 33.566 2.03e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212044g00002 K02952 - gmx:100499902 260.766