Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212043g00006 ATGGCTCTTACATCAAATGATTCCGATGTAAAACTTGAGAAACAAGAAGATGATGCCTTTTTGTTTGCACAAATGGCATGTTCAATAGTGGTTCCAATGGCTGTGAGGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCAAAAGATATTGTGGATCAAATTGGAACCAACAACCCTGAAGCAGCAACAATGCTGGATCGTGTTCTTAGGCTTCTTGCAAGTCATTCATTACTGTCTTGTGTTGTTGAAGATCCAAATAACTTGCAAGAGAGGATGTATAGCCTCTCACCTGTCTCCAAATATTTTGTGACAGATGCTGATGGTGTGTCTTGGGGACCCTCTTTGGCACATCTTTTGGATCAAATCATATATCCATGCTGGAGTGAACTGAAAAGAGCCATTTTAGAAGGAGGTTTACCATTCAACAGGATTTATGGTATGAATGTCTTTGAGTATGCAAATGTTGATCCTAGATTCAACGAGGTTTTCAACAAAGCTATGCTCACATCCTCCACTATATCAATGAAGAGGATTCTTGATGTGTACAAAGGTTTTGACCACATCAATAAACTAGTCGACGTTGGTGGGGGTCTTGGGGCCAGTCTCAAATTGATTACTTCCAAATACCCAAATATTCAGGGTATCAATTTTGATTTGCCTCATGTTATAGAAAATGCCCCCCTCTATGCTGGTGTGGAGCACGTTGGGGGAGATATGTTTGGGGGTGTTCCAAATGGGGATGCCATTTTTATGAAGAGCGTACTTCATGATTGGGATAACAAAGAATGCTTGAAGATATTGAAGAATTGCCACAAAGCTATACCGAATGATGGGAAGGTGATTGTGGTGGATAAAGTTCTGCCTGCATTACCAGAACAAAGCGATGTTGCTAAAATGGCTTTCAGATTTGATGTTTTCATGATGATTCAAACATCAAAAGGGAAAGAACGAACCCAGCAAGATTTCATCGATTTGGCGAAAGCATCTGGATTTAGTACCATAAGATTCGTTTGTAGTGTTTCTACCTTTTGGGTCATGGAGTTTTACAAGCAGTAG 1089 0.405 MALTSNDSDVKLEKQEDDAFLFAQMACSIVVPMAVRTTIELGVFDIIAKAGEGAKLSAKDIVDQIGTNNPEAATMLDRVLRLLASHSLLSCVVEDPNNLQERMYSLSPVSKYFVTDADGVSWGPSLAHLLDQIIYPCWSELKRAILEGGLPFNRIYGMNVFEYANVDPRFNEVFNKAMLTSSTISMKRILDVYKGFDHINKLVDVGGGLGASLKLITSKYPNIQGINFDLPHVIENAPLYAGVEHVGGDMFGGVPNGDAIFMKSVLHDWDNKECLKILKNCHKAIPNDGKVIVVDKVLPALPEQSDVAKMAFRFDVFMMIQTSKGKERTQQDFIDLAKASGFSTIRFVCSVSTFWVMEFYKQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212043g00006 362 Gene3D Vaccinia Virus protein VP39 114 361 IPR029063 -
Stsc212043g00006 362 SUPERFAMILY "Winged helix" DNA-binding domain 16 116 IPR036390 -
Stsc212043g00006 362 Gene3D - 3 113 IPR036388 -
Stsc212043g00006 362 PANTHER O-METHYLTRANSFERASE 25 359 IPR016461 GO:0008168
Stsc212043g00006 362 Pfam Dimerisation domain 33 84 IPR012967 GO:0046983
Stsc212043g00006 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 359 IPR029063 -
Stsc212043g00006 362 Pfam O-methyltransferase domain 138 343 IPR001077 GO:0008171
Stsc212043g00006 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 361 IPR016461 GO:0008168
Stsc212043g00006 362 FunFam Caffeic acid 3-O-methyltransferase 3 113 - -
Stsc212043g00006 362 FunFam Caffeic acid O-methyltransferase 114 361 - -
Stsc212043g00006 362 PIRSF O-mtase 1 361 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212043g00006 Stsc-Chr212043 26243 31485 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212043g00006 1 362 Monolignol Biosynthesis Gene Families AT5G54160 48.352 2.52e-125 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212043g00006 K13066 - gmx:100789402 468.388