Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212043g00005 ATGCTGCCAGACTTGAATGAGCCCTTGTTCCCCGATTTGAACCAACCACTCGAACTACCAGAGCGACCCTATCAACCAATCTTTCCTCTGGTTGGAAGTCTTTCCGGGGAAGGCCAACGAGCAGTTGACCACCTAATTTCACTAGAGAATCTCCTTGCCAGCGTACTTCATGATTGGGATAACAAAGAATGCTTGAAGATATTGAAGAATTGCCACAAAGCTATACCGAATGATGGGAAGGTGATTGTGGCGGATAAAGTTCTGCCTGCATTACCAAAACAAAGTGATGTTGCTAAGATGGCTTTCAGATCTGATGTTTTCATGATGATTCAAACATCAAAAGAGATGGAACGAACCCAGAAAGATTTCATGGATTTGGCCAAAGCATCTGGATTTAGTACCGTAAGATTCGTTTGTAGTGCTTCTACCTTGTGGGTCATGGAGTTTTACAAGCAGTAG 459 0.4336 MLPDLNEPLFPDLNQPLELPERPYQPIFPLVGSLSGEGQRAVDHLISLENLLASVLHDWDNKECLKILKNCHKAIPNDGKVIVADKVLPALPKQSDVAKMAFRSDVFMMIQTSKEMERTQKDFMDLAKASGFSTVRFVCSASTLWVMEFYKQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212043g00005 152 Gene3D Vaccinia Virus protein VP39 52 140 IPR029063 -
Stsc212043g00005 152 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 52 149 IPR029063 -
Stsc212043g00005 152 PANTHER O-METHYLTRANSFERASE 51 149 IPR016461 GO:0008168
Stsc212043g00005 152 Pfam O-methyltransferase domain 51 133 IPR001077 GO:0008171
Stsc212043g00005 152 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 151 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212043g00005 Stsc-Chr212043 16124 17025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212043g00005 26 151 Monolignol Biosynthesis Gene Families AT1G21110 40.945 2.19e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212043g00005 K13066 - gmx:100789402 131.339