Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212043g00004 ATGGCCCTTGCATCAGATTCCAATGGGGAACCCCAGAAGTACCTCAAACCAGAAGAACTTGACCAACAAGAAGAAGAGGATGGGTTCTTGATTGCAAGGCAAATAACAAGTTCATCAGTTGTGGTTCCAATGGTTTTGAGGACAGCCATTGAACTTGGTGTATTTGACATCATAGCCAAGGCAGGGGAAGGTGCGAAGCTCTCAGCAAAAGATATTGTAGATCACATTGAAACCAGCAACCCTGAAGCAGCAATAATGTTGGATCGAGTTCTTAAGCTTCTTGCAAGTCACTCGTTGTTGTGTTGTTCTGTTGTTGAAGATCCAAAAAATCCTACTAAGTTTCATCAGAGGCTATACAGCCTCTCACCTACTTCCAAACATTTTGTGACTGATGCTGATGGTTTGTCTTTGGAAACCTCGTTGTTCTTTCATCTGGATAAGGTCATCTTCCAAAGCTGGAGTGAACTGAAAGGAGCAATTCTTGAAGGAGGTATACCATTCAATAGGGCTCATGGCATGCATGTTTTTGAATATGCAAAGATTGATCCTAGGTTCAACGAGGTTTTCAATAAGTCTATGGTGAACTCCTCCACTATATTAATGAAGAGGACTCTTGATCTCTACAAAGGATTTGATCACGTTAATAAACTAGTGGACGTTGGTGGTGGTGTTGGAAACAATCTTAAATTGATCACTTCTAAGTACCCTCATATTCATGGTGTGGAGCACGTGGCAGGAGATATGTTTGGGAGTGTTCCTAATGGAGATGCTATTTTCATAAAGAGAGTACTTCATGATTGGGGTGATGAAGAATGCTTGAAGATATTGAAGAATTGCCACAAGGCTATACCCAATGATGGGAAGGTCATCGTAATGGATATGATCATTCCCATTGTGCCTGAGCCAACAGCTAGTGTCAAAGACTCTTTTAGAGCTGATGATGTCATGATGGCTCAGACCCCAGGAGGGTTTCAAAGAAGTAAACAAGATTTCATGGACTTAGCAAATGGATCTGGATTTAATGGCATAAGGTTTGTTTGTTGTGTCTATAGCTTTTGGATCATGGAGTTCTACAAGGCTACTACTTAA 1089 0.4114 MALASDSNGEPQKYLKPEELDQQEEEDGFLIARQITSSSVVVPMVLRTAIELGVFDIIAKAGEGAKLSAKDIVDHIETSNPEAAIMLDRVLKLLASHSLLCCSVVEDPKNPTKFHQRLYSLSPTSKHFVTDADGLSLETSLFFHLDKVIFQSWSELKGAILEGGIPFNRAHGMHVFEYAKIDPRFNEVFNKSMVNSSTILMKRTLDLYKGFDHVNKLVDVGGGVGNNLKLITSKYPHIHGVEHVAGDMFGSVPNGDAIFIKRVLHDWGDEECLKILKNCHKAIPNDGKVIVMDMIIPIVPEPTASVKDSFRADDVMMAQTPGGFQRSKQDFMDLANGSGFNGIRFVCCVYSFWIMEFYKATT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212043g00004 362 MobiDBLite consensus disorder prediction 1 21 - -
Stsc212043g00004 362 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Stsc212043g00004 362 Pfam O-methyltransferase domain 240 341 IPR001077 GO:0008171
Stsc212043g00004 362 Pfam O-methyltransferase domain 153 239 IPR001077 GO:0008171
Stsc212043g00004 362 SUPERFAMILY "Winged helix" DNA-binding domain 23 131 IPR036390 -
Stsc212043g00004 362 Gene3D - 12 128 IPR036388 -
Stsc212043g00004 362 FunFam Caffeic acid 3-O-methyltransferase 10 128 - -
Stsc212043g00004 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 359 IPR016461 GO:0008168
Stsc212043g00004 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 358 IPR029063 -
Stsc212043g00004 362 PIRSF O-mtase 13 359 IPR016461 GO:0008168
Stsc212043g00004 362 Gene3D Vaccinia Virus protein VP39 129 359 IPR029063 -
Stsc212043g00004 362 PANTHER O-METHYLTRANSFERASE 37 357 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212043g00004 Stsc-Chr212043 9105 14656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212043g00004 22 359 Monolignol Biosynthesis Gene Families AT5G54160 45.070 1.44e-109 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212043g00004 K13066 - gmx:100789402 410.994