LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc212041g00003	ATGAGCACCAGGGACCTCGATTTCGAGTCAGACAAAGTTACGGCCAGCGACTTTCTCAAGAACTTCGCTGACATCAATGGCGAACCAAAATACATGAACATCCTTCAAGATGTAGCAAACCACAAAACTCGTGCCGTCCAGATCGATCTCGACGATTTAATTAATTACAAGGATTTAGACGAGGAATTTCTGAGGCGTGTAACAGAGAATACTAGGAGGTACATTGGGGTTTTTTCGGATGCCATTGATGAGATCATGCCGGATTCTACTGAGGCCTTCATAGATGATGACCATGACATATTGATGACACAAAGATCAGACGAAGCTGCGGAAGGTGAAAATGGTTCAGACCCACAGCAGAGGATGCCTCCTGAAATCAAGCGCTACTATGAAGTCTATATTAAAGCACCTTCAAAGGGACGGCCATATACAATTAGGGAGGTGAAGGCTTCATATATTGGTCAGCTTGTGAGGATATCTGGTATAGTGACTCGCTGCTCAGATGTTAAACCTTTAATGAAGGTTGCTGTATACACATGTGAGGATTGTGGTTTTGAAATTTACCAGGAAGTAACAGCTCGAGTCTTCATGCCTTTGTTTGAGTGTCCATCCACTCGCTGTAAAATGAATAACAATAAGGGGAACCTTATCCTTCAGCTGAGAGCTTCCAAGTTTTTGAAATTTCAAGAGGCAAAAGTTCAAGAATTAGCTGAACATGTTCCAAAGGGCCATATTCCACGAACAATGACTGTTCATTTTAGGGGAGAGCTCACAAGAAAGGTGGCTCCTGGTGATGTGGTTGAATTATCTGGGATTTTTCTTCCTATACCTTACACTGGTTTTAGAGCAATGCGTGCCGGTCTGGTTGCTGACACTTACTTAGAGGCCATGTCTGTAACTCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGACGAGGAGGAGCAGATTGCACGTTTAGCAGAAGACGGTGACATCTACAATAAGTTAGCAAGATCATTGGCTCCTGAAATTTTTGGACACGAAGATATTAAAAAAGCACTGCTGCTGCTTCTTGTTGGTGCTCCCCATCGGAAGTTGAAAGATGGGATGAAGATTAGAGGAGATTTACACATATGTTTGATGGGTGATCCTGGTGTTGCCAAGAGTCAGCTCCTTAAGCATATAATCAATGTAGCTCCAAGGGGGGTGTACACCACTGGCAGAGGTAGTAGTGGAGTTGGTCTAACTGCTGCCGTTCAGAAAGATCCAGTGACAAATGAGATGGTTCTTGAAGGTGGAGCATTGGTTCTAGCAGATATGGGCATATGTGCCATTGATGAGTTTGACAAGATGGATGAATCAGATCGAACAGCTATACATGAAGTCATGGAACAGCAGACTGTTAGCATTGCCAAAGCTGGGATTACTACTTCACTGAATGCAAGGACTGCCGTGCTTGCTGCAGCTAATCCTGCCTGGGGAAGATATGATCTAAGAAGAACTCCAGCTGAAAATATTAATCTTCCACCTGCTCTCCTATCAAGATTTGATTTGCTGTGGTTAATCCTTGATCGAGCGGATATGGATAGTGATCTTGAAATGGCAAGGCATGTTGTCTGGGTCCACCAACATAAAGAGTCCCCTGCTCTAGGATTCGCTCCTCTTGATCCCTCTGTTCTTCGTGCCTACATATCTGCTGCAAGAAGATCATCTCCCACTGTCCCAAGGGATCTGGAAGAGTATATTGCGAGTGCATACTCCAGCATTCGTCAAGAAGAAGCCAAGTCTAGTACTCCCCATTCATATACAACTGTCAGAACATTGCTCAGTATTCTCCGTGTATCAGCTGCGCTTGCAAGACTCCGTTTCTCTGAAACAGTTGCTCAGAGTGATGTGGATGAGGCACTGAGGTTAATGCAGATGTCAAAATTCTCTTTATACTCCGACGAACGGCAAAGATCTGGTCTGGACGCCATATCAGATATTTATTCCATTCTTCGTGATGAAGCTGCAAGGAGTGGCAAAACAGATGTCAGCTATGCTCAAGCACTGAATTTGATATCTAGGAAGGCATACAGCGAAGCTCAATTGAAAGAGTGTTTAGAGGAGTATGCAGCACTAAATGTCTGGCAGATAAGTCAGTCATTCGATATCAAGTTTATTGATACTTGA	2160	0.4352	MSTRDLDFESDKVTASDFLKNFADINGEPKYMNILQDVANHKTRAVQIDLDDLINYKDLDEEFLRRVTENTRRYIGVFSDAIDEIMPDSTEAFIDDDHDILMTQRSDEAAEGENGSDPQQRMPPEIKRYYEVYIKAPSKGRPYTIREVKASYIGQLVRISGIVTRCSDVKPLMKVAVYTCEDCGFEIYQEVTARVFMPLFECPSTRCKMNNNKGNLILQLRASKFLKFQEAKVQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEQIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDSDLEMARHVVWVHQHKESPALGFAPLDPSVLRAYISAARRSSPTVPRDLEEYIASAYSSIRQEEAKSSTPHSYTTVRTLLSILRVSAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDERQRSGLDAISDIYSILRDEAARSGKTDVSYAQALNLISRKAYSEAQLKECLEEYAALNVWQISQSFDIKFIDT	719

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc212041g00003	719	Pfam	MCM AAA-lid domain	555	638	IPR041562	-
	Stsc212041g00003	719	Pfam	MCM N-terminal domain	16	135	IPR027925	-
	Stsc212041g00003	719	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	15	654	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	Pfam	MCM P-loop domain	316	538	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	481	493	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	429	443	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	508	516	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	457	470	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	369	384	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Stsc212041g00003	719	SMART	mcm	141	640	IPR031327	GO:0003677\|GO:0005524\|GO:0032508

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc212041g00003	Stsc-Chr212041	8137	13693	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc212041g00003	4	717	Core DNA Replication Machinery Family	AT4G02060	83.916	0.0	1254

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc212041g00003	K02210		-	nnu:104605084	1283.86

Showing 1 to 1 of 1 entries