Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212041g00002 ATGGAAGGTTACTTTTTTTCAATCTACAATGGTGAAGACGGTCAACCTCTGGCAATATACTCAAATTGTTCAACATCTTCTGTTATTTCTAAACATTATTATGTTCAGCCAGTGAATCGTGACAGTGGAAAATTATATGGGAATGCAACAATATTTGAGCCCTATGTTAATGCAACTTTGGTTGGGGAAGCTCTACTTAATGGCTCAAATGATGGCTTTGTCACATTGGGAAGAAAGTTTAGCAATGATCAGGAACTTTTGTTCATTAGTTCATCAAGAATCAGAAAAACAGGTTCAGTGATCTCTCTTGGGGTTCAAGCAACAAAAGTAACTGATTTTTTTGCTAGTGTTATTGCTCGTCATCAACAAGGTTCCATGTTGTATATGGCTACAGAAGATGGACAAGTGCTTCTAGAAGGGATCAAGAACACCCATATGGTTGTTTCTGATAATGATAAGGTTTCTTTCCAATATGTGAATAATCATACTAGTTATTATCAGGGTTCTGTTACATGCAAAGATGATGGTGGAGTTGTTGCTTCTACTTTGAAGATTCAAGATGTTAAGTACTTAATGCACTGCTCCTCAATTCAGATAATGGGGATCAAATTGTTGTATGTTGTAGCAGTGCCACAAAATGGAGAAATGATCAGTTTCATAAAGAAATTCAAGAAGTATGGGTTGATGCATGCCATGACGTTTCGTGCTTCCCTCACAACCCTCACTGGTTTGATAGACTTGTCATCTTCGCAGCTTGTCCCTTCTTCATCAGAACTAAACTCCTATCTCAAGCAAATGGATTCTTGTACTAAGGATTTACTAGGAATGCTTAATTCCATATTGGATGCAAGCAAGATTGAGGCAGGGGAAATGCAACTTGAGGAAGAAGAATTTGATGTGTTCCAATTCCTAAAGGAGGTGGTTGATTCCTACCATAATGTGGCTATGAAGAAAGGAGTAGATATTGTATTGGATCCTTTCAATGACTTGGTTCACAGATATTCACACACAAAAGGTGACAGAGTTAAACTCAAGAGAGTCTTATGCAACTTATTAGACAATGCTGTTAAATTCACTGATGAAGGACACATAGCAGTTAGGGTAAAGGCACAGAAACCTACCTTACAGAACTCAATGTCAATGATGAGCGTTACTAACCAAAATAGATATTGCTCATGCTTATTCATCAGTCGAAAAAATAATGAACCACATAATAACCATGACATAGAAGCCAATAATTCAACCCAACAAGATCCTAGTAATACTATGGATTTCATATTTGAAGTTGATGATACTGGCAAAGGAATTTCTAGAGACAAGCATGAGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCTATTGATGGAACTGGCTTGGGACTTGGCAGTGTGAGGTCCTTGGTTCGTTTGATGCATGGAGATATTAGAATTGTCCAGAAGGATAGTGGTGCAAAAGGAACATGTTTCAAGTTCAATGTGCACCTCACTGTATGTCAGACATATGATATCACAAGAGAAAGTGAATCTAAACTAGTTGACAGAAATCAATCACATGGCTTAACCATTCACAATACTAGTTCTGGTTCAAGCATGTGTTCCTTGAGTCCCAAGCTGCCTATCTGTGGCCCTAGTACTTCTCGACATGAGGGATCTCGAGTTGTTCTCTTGATTCAAGGTGATGAGCGCCGAAGAGCAACACAAAGGTTTGTGGAGCGAAAAGGGATCAAAGTTAAGGCTGTGAAGGAGTGGAGAAATCTGTCTCATACCCTCGATAGGATAAAAAAGAAGGGTCTGAATAGCTCAAGTTCAGGTTCTAGTTCTAGTTCTACTATACCTAGCTTTGCTAATGCCCCTTTGAGTGCTTCCATGGATGAAACTGAATCAACCCGAGCATTCGTCCTGCTTGTGGTTGATGCAAAAGCAGGACCATTTCAAGAACTATGCAGGCTGGTATCTGAATTCAAGAGAGGCCTTTATATTTCTTGTAGAGTTGTTTGGTTAGAGAATCCAATTTCTCCTAATGTTGATTTCAAAAGCATAAATGAGGATGATTATGACCCAAATGACATTGTTCTTCATAAACCATTACATGGTAGCTCTTTGTTCCAAGTTTTAAGTCTTCTTCCTGAGTATGGTGGTGGATCCTTGAGAGGAAGTGGGTCAATACTAGCTTCCACAAGTGCAATTCAAAGAGTTGAACTAGAAAAGTGCGGCACTTCAAGGTCAATGAGTGGGAAGGAACCACAACAATGCTTTGGAGATCAATCTCATGATAGTTCCAAAGTAAGAACATCACCTCCAGTTCATCAAGGAGGAACAAAAGAGTGTGAAGTTCCAAGAAGCAGCAACAAGCCCTTGAGTGGTAAGAGAACCATGGTTGTTGAAGACAATAAAGCGGCTCGTATGGTAGCTTCTACTTTTTTGGAACAGCTTGGCGCTTCTGTTGAGAAATGTGAGAATGGTAAAGAAGCTGTGGAGCTAGTTAAAGAGGGTCTAACCAGAGATTTTCCAAATCCTCCATATGATTACATCTTAATGGACTGCCAGATGCCAGGGATGAATGGATATGAGGCAACAAGGCAAATAAGAGAGATAGAGAAGGCGTATGATATTCACATCCCTATAATTGCATTAACTGCTAATACTGAGGAAGAGGCAAAAATGAGATCAGAATCTGGAATGGACCAACGTCCATTGACATTAGAAGCTGGAATGGACCATCACCTAGTCAAACCCATTAAAAAAGACAAGTTACTTGAAGCCATCACAAAAGTACACGGTAGAGTTGGGACTAGAGAGTGA 2808 0.3942 MEGYFFSIYNGEDGQPLAIYSNCSTSSVISKHYYVQPVNRDSGKLYGNATIFEPYVNATLVGEALLNGSNDGFVTLGRKFSNDQELLFISSSRIRKTGSVISLGVQATKVTDFFASVIARHQQGSMLYMATEDGQVLLEGIKNTHMVVSDNDKVSFQYVNNHTSYYQGSVTCKDDGGVVASTLKIQDVKYLMHCSSIQIMGIKLLYVVAVPQNGEMISFIKKFKKYGLMHAMTFRASLTTLTGLIDLSSSQLVPSSSELNSYLKQMDSCTKDLLGMLNSILDASKIEAGEMQLEEEEFDVFQFLKEVVDSYHNVAMKKGVDIVLDPFNDLVHRYSHTKGDRVKLKRVLCNLLDNAVKFTDEGHIAVRVKAQKPTLQNSMSMMSVTNQNRYCSCLFISRKNNEPHNNHDIEANNSTQQDPSNTMDFIFEVDDTGKGISRDKHESVFENYVQVKETAIDGTGLGLGSVRSLVRLMHGDIRIVQKDSGAKGTCFKFNVHLTVCQTYDITRESESKLVDRNQSHGLTIHNTSSGSSMCSLSPKLPICGPSTSRHEGSRVVLLIQGDERRRATQRFVERKGIKVKAVKEWRNLSHTLDRIKKKGLNSSSSGSSSSSTIPSFANAPLSASMDETESTRAFVLLVVDAKAGPFQELCRLVSEFKRGLYISCRVVWLENPISPNVDFKSINEDDYDPNDIVLHKPLHGSSLFQVLSLLPEYGGGSLRGSGSILASTSAIQRVELEKCGTSRSMSGKEPQQCFGDQSHDSSKVRTSPPVHQGGTKECEVPRSSNKPLSGKRTMVVEDNKAARMVASTFLEQLGASVEKCENGKEAVELVKEGLTRDFPNPPYDYILMDCQMPGMNGYEATRQIREIEKAYDIHIPIIALTANTEEEAKMRSESGMDQRPLTLEAGMDHHLVKPIKKDKLLEAITKVHGRVGTRE 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212041g00002 935 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 278 495 IPR036890 -
Stsc212041g00002 935 SMART HKATPase_4 339 499 IPR003594 -
Stsc212041g00002 935 MobiDBLite consensus disorder prediction 744 769 - -
Stsc212041g00002 935 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 498 IPR003594 -
Stsc212041g00002 935 MobiDBLite consensus disorder prediction 742 790 - -
Stsc212041g00002 935 Gene3D - 231 291 - -
Stsc212041g00002 935 Gene3D - 771 930 - -
Stsc212041g00002 935 SUPERFAMILY CheY-like 787 930 IPR011006 -
Stsc212041g00002 935 PRINTS Bacterial sensor protein C-terminal signature 425 439 IPR004358 GO:0016310|GO:0016772
Stsc212041g00002 935 PRINTS Bacterial sensor protein C-terminal signature 457 475 IPR004358 GO:0016310|GO:0016772
Stsc212041g00002 935 PRINTS Bacterial sensor protein C-terminal signature 443 453 IPR004358 GO:0016310|GO:0016772
Stsc212041g00002 935 ProSiteProfiles Histidine kinase domain profile. 229 499 IPR005467 -
Stsc212041g00002 935 PANTHER TWO-COMPONENT HISTIDINE KINASE 239 926 - -
Stsc212041g00002 935 Gene3D - 292 504 IPR036890 -
Stsc212041g00002 935 ProSiteProfiles Response regulatory domain profile. 792 928 IPR001789 GO:0000160
Stsc212041g00002 935 Pfam Response regulator receiver domain 794 924 IPR001789 GO:0000160
Stsc212041g00002 935 CDD REC_hyHK_CKI1_RcsC-like 794 924 - -
Stsc212041g00002 935 SMART REC_2 791 924 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212041g00002 Stsc-Chr212041 3828 7352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212041g00002 2 917 Histidine Kinase Gene Family AT2G47430 36.195 1.74e-169 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc212041g00002 HATPase_c 3.7e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212041g00002 - - aip:107646610 1452.57