Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212036g00004 ATGAGGGAAAGAATCCTTGTTCTTCTGCTGCTTGTTCTTAATTATCTGTTGGTTGCAAAAGGAGAAACGGCTGATGAAGATTTGGTCACCCTTAAGTCTCTTGTGGATACCTTGAAGAAAACTCCTCCTAATTGGGACGGTTCGGATCCTTGTGATGGTTGGGATGGAATTAAGTGTGAGAATTCACGTGTCACAGCCATAACATTGTCCAGCATGGGTTTGGAAGGCGAGCTTTCCGGAGATATTGGATCACTATCAGAATTAGAGATTTTGGATCTTTCTTACAACAAGGACTTGACAGGACCACTTCCACAAGCCATTGGAGAGTTGAGGAAACTGTCAACCTTAATTCTTGTTGGCTGTAGCTTCAATGGTCCTATTCCAGATGAAATCGGATTGCTGCAGGAGCTTCGCTATATATCTTTAAATTCCAATAGCTTCACTGGGGAGATTCCACATTCTATCGGTAATCTGTCGAATCTCTATTGGTTAGATTTAGCTGACAATGAGCTTCAAGGACCTATCCCAATATCAAGTGGCAGTGTACCTGGTCTTGATAATTTACACCATGCTAAACATTTTCATCTTGGGAAGAATAATCTCTCAGGCAATATTCCTCCTCAACTTTTTAGCTCGGAAATGGCTCTGATCCATTTGCTTTTGGAAAGCAATAATCTCATAGGCAAGATTCCATCTACACTTGGATTGGCTAAGACTCTGGAGGTCTTGCGTTTGGATAGTAATTTCTTAAGTGGACCTGTGCCTCCAAACATCAACCATCTTACCAATGTTCAAGAGCTGCACTTGTCGAACAATAAACTTTCCGGCACCCTGCCCAGCCTTGGTGAAATGAGTGCCCTCAACTACCTGGATCTGAGCAACAATACTTTTGAGCCAATGGATTTCCCATCATGGATTTTGACTCTCACTTCTTTAACAACATTAAATATGGAGAACACACAACTTCAAGGAGAAGTTCCTGCTTCTTTGTTTAGTTTTGTCAATTTGCAGACTGTGGTGTTAAAAGGAAACAAAATAAATGGAACCTTGAATCTCAGCTCCACCTACAGCAAGCATCTGCGACTTATTGATCTTGAAAATAATGAAATTGACAATTTTGAGCAAAAAGATGACCCTTTAAGTGTCACAATAATGCTTAAGGGTAACCCAGTTTGCTATGAAACTGTAGGGGAGGTAGCTCCTCCCTACTGCTCAAATATGCAAGCTGATCAACTGTCATATATAACTCCAACAAATAACTGCCAGCCTAGCAGTTCTTGCAGTTTAGGACAGCTTCCTAGCCCCAACTGTGCATGTGCATATCCATATACAGGAACTTTAACTTTCAGGGCACCTTCTTTTTCAGACCTAGGAAACAAGTCTTACTTCCTACACCTTGAGCAGGGTCTAATGCAATCTTTCGAGTCTCATCGCCTACCTGTTGATTCTGTTTTGTTGAGTCATCCAACTGAGGATCCAAATCACTATCTTGAACTGAGTTTAAAAGTCTTCCCATCAGGACAGGATCGTTTCAATCGAACAGGAGTTTATACCATTGGTTTTCTGCTAAGCAACCAGACTTTTAAGCCTCCTAAAGTTTTTGGACCGTTTTACTTTGATGCAGATAAATATATACACTTTGGAGACTATGGTCCTATGGAGTCAAGCAAATCAGTTAACATTGGAATCATAGCTGGAGCAGTGGTTGGTGGTTTTGTGCTGGTAGTGTTATTAGTGGTAGCAGCCGTTTATGCTTTCTGCCAAAAGAAAAGAGCTGAAAGAGCAATTGGACAAAGCAATCCCTTTAGACGATGGGATATAGCTGAGAGTAAGGGTGACATGCCTCAGTTGAACGAAGCACGCCGGTTTTCTTTCGAAGAGCTTAAAAGATACACCAGAAATTTTTCTCAAGCCAACGATATTGGATCTGGGGGTTATGGGAAGGTTTACAAGGGAACCCTCCCCAATGGACAACTGGTAGCAATAAAAAGAGCTCAAAGAGAATCTAAGCAGGGAAGGCTTGAGTTCAAAGCTGAGATTGAGCTTCTATCAAGGGTCCACCACAAGAATCTTGTTACCCTTGTAGGATTCTGCTTTGAGCATGAAGAACAAATGCTGGTTTATGAGTATGTTCCAAATGGAACATTAAAGGACACTCTCACAGGCAAATCAGGAATTAGATTGGATTGGGTTGGAAGGCTAAAAGTTGCACTTGGGGCTGCTCAGGGTTTGACTTATCTTCATGAACTTGCTGATCCTCCCATCATACACAGGGACATCAAATCAAACAATGTTTTGCTGGATGAGTACCTAAACGCCAAAGTTGGTGATTTTGGTCTCTCCAAGTCCATTGTTGATCCTGAAAAAGATCACGTTACCACTCAAGTTAAAGGAACAATGGGATACTTGGATCCAGAGTATTATATGAGTCAACAACTGACAGAGAAGAGTGATGTATATAGCTTTGGAGTGCTGATGTTGGAGCTGATATCTGCAAGAAGGCCAATAGAAAGAGGGAAGTACATTGTGAAAGAGGTTAGGAATGCAATGGACATGACAAAAGTTCTGTGTGGTCTGCATGAAATCATTGACCCAAGCATTGGTGTAGGGTCCTCCAGAAGCAGCATTGGGGTTGTTGGTCTGGACAAGTTTGTGGATTTGGCTATGAAATGCGTTTCAGATTCAGGTGTTGAGAGACCAAAGATGAGTGAGGTTGTTAGAGAACTAGAGAACATATTGCATTATTCATCAGCAGCTGGTTCAAATGATGTATCATCATCAGGTTCCATGATTTCTTCCAGTTATGAGGAGGTTAGCAGAGGCAGTTCCAGTTGCCATCCTTACAGCAGTGAATCCTTTGATTTCAAAGCCCCACTTGCCACTTCCATTTCCAAAACTGGACCCTAA 2907 0.4176 MRERILVLLLLVLNYLLVAKGETADEDLVTLKSLVDTLKKTPPNWDGSDPCDGWDGIKCENSRVTAITLSSMGLEGELSGDIGSLSELEILDLSYNKDLTGPLPQAIGELRKLSTLILVGCSFNGPIPDEIGLLQELRYISLNSNSFTGEIPHSIGNLSNLYWLDLADNELQGPIPISSGSVPGLDNLHHAKHFHLGKNNLSGNIPPQLFSSEMALIHLLLESNNLIGKIPSTLGLAKTLEVLRLDSNFLSGPVPPNINHLTNVQELHLSNNKLSGTLPSLGEMSALNYLDLSNNTFEPMDFPSWILTLTSLTTLNMENTQLQGEVPASLFSFVNLQTVVLKGNKINGTLNLSSTYSKHLRLIDLENNEIDNFEQKDDPLSVTIMLKGNPVCYETVGEVAPPYCSNMQADQLSYITPTNNCQPSSSCSLGQLPSPNCACAYPYTGTLTFRAPSFSDLGNKSYFLHLEQGLMQSFESHRLPVDSVLLSHPTEDPNHYLELSLKVFPSGQDRFNRTGVYTIGFLLSNQTFKPPKVFGPFYFDADKYIHFGDYGPMESSKSVNIGIIAGAVVGGFVLVVLLVVAAVYAFCQKKRAERAIGQSNPFRRWDIAESKGDMPQLNEARRFSFEELKRYTRNFSQANDIGSGGYGKVYKGTLPNGQLVAIKRAQRESKQGRLEFKAEIELLSRVHHKNLVTLVGFCFEHEEQMLVYEYVPNGTLKDTLTGKSGIRLDWVGRLKVALGAAQGLTYLHELADPPIIHRDIKSNNVLLDEYLNAKVGDFGLSKSIVDPEKDHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPIERGKYIVKEVRNAMDMTKVLCGLHEIIDPSIGVGSSRSSIGVVGLDKFVDLAMKCVSDSGVERPKMSEVVRELENILHYSSAAGSNDVSSSGSMISSSYEEVSRGSSSCHPYSSESFDFKAPLATSISKTGP 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212036g00004 968 Gene3D Transferase(Phosphotransferase) domain 1 711 932 - -
Stsc212036g00004 968 Gene3D Phosphorylase Kinase; domain 1 605 710 - -
Stsc212036g00004 968 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 711 925 - -
Stsc212036g00004 968 ProSitePatterns Protein kinases ATP-binding region signature. 641 663 IPR017441 GO:0005524
Stsc212036g00004 968 Gene3D Ribonuclease Inhibitor 22 179 IPR032675 -
Stsc212036g00004 968 ProSiteProfiles Protein kinase domain profile. 635 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212036g00004 968 CDD STKc_IRAK 641 912 - -
Stsc212036g00004 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Stsc212036g00004 968 SUPERFAMILY L domain-like 58 423 - -
Stsc212036g00004 968 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Stsc212036g00004 968 Gene3D Ribonuclease Inhibitor 180 387 IPR032675 -
Stsc212036g00004 968 FunFam Leucine-rich repeat family protein 26 180 - -
Stsc212036g00004 968 SUPERFAMILY Protein kinase-like (PK-like) 621 922 IPR011009 -
Stsc212036g00004 968 FunFam Leucine-rich repeat protein kinase family protein 602 710 - -
Stsc212036g00004 968 PANTHER RECEPTOR-LIKE PROTEIN 55 36 912 - -
Stsc212036g00004 968 SMART serkin_6 635 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212036g00004 968 Pfam Protein tyrosine and serine/threonine kinase 638 837 IPR001245 GO:0004672|GO:0006468
Stsc212036g00004 968 Coils Coil 356 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212036g00004 Stsc-Chr212036 9136 14022 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212036g00004 1 962 Receptor kinase-like Gene Family AT5G49760 54.188 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc212036g00004 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212036g00004 - - gmx:100811702 1330.47