Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212034g00002 ATGGGTTGGGAGCACATTGGAATAAATGGCAGCGACGAAGTTGGTCCTAGCGGCACCACCCCTACAACCACTGAGCCACGGCGGTTCCCTCTGGCTGCTCAGCCTGAGATGATGCGTGCCGCCGAGAAGGACGAACAGTATGCCTCTTTCGTCTATGAAGCCTGTCGTGATGCGTTCCGCCATCTCTTCGGTACGAGGGTTGCTGTTGCTTATCAAAATGAGACAAAACTCTTGGGGCAAATGTTGTACTATGTTCTCACAACAGGTTCAGGGCAGCAAACGCTTGGGGAGGAGTACTGTGACATCACTCAGGTTGCTGGCCCTTATGGGCTGCCTCCTACCCCTGCAAGGCGCACTCTTTTCATTGTATACCAGACAGCTATTCCTTATATTGCAGATCGTATTAGTTCACGAATTGCTTCCCGTGGAATTGCCCTTGCTGATTCAGAGTTTGCTGAGAGTTATGGTGAAAGTGCAGTCAGGAGCAGTAGTTCACAGGACCCTGCTGCTAGTCCTTCTACTTCGACATCAGGGCAACATAGTACAACTCTTTCAAGATTGAAACAAAAACTGAGTGGTTTTTGGTTGCATGTAGTTCAGCGATGGCCTGCGATGCTCCCTTTTGTGCGTGAGTTGATACAGCTGGTTCTTCGTGCTAATCTAATGCTTTTCTACTTTGAAGGACTTTATTATCATATATCCAAGCGTGCTGCAGGCATTCGCTATGTATTCATTGGAAAATCTTCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTGTGTGTAATAGCTGCAGAAAGGCTACGCCGAAGAAATTTATCTTCAATTGCTAGCTCAGTTCATCAGGCATCCTTTGCAACACAACAGAGATCCTCAGGACATGGTTTGCCTGTTTTGAGTGAAGAAGGTAATCTGGCATCTCTAGATACTGACGAAGGAAGTTGGGTCTTTGATTCTTCGTCTTCTGAGTATGGGACTAGCAAATGCACTCTTTGCCTAAGTAATCGTCAACATCCAACAGCTACATCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAATGTCCTCTTTGCCGCACCCCAATAACACATTCAAGTTTAGTTTGTGTGTATCATTCAGACTTCTAG 1170 0.4607 MGWEHIGINGSDEVGPSGTTPTTTEPRRFPLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLFIVYQTAIPYIADRISSRIASRGIALADSEFAESYGESAVRSSSSQDPAASPSTSTSGQHSTTLSRLKQKLSGFWLHVVQRWPAMLPFVRELIQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKSSNQRPRYQILGVFLLIQLCVIAAERLRRRNLSSIASSVHQASFATQQRSSGHGLPVLSEEGNLASLDTDEGSWVFDSSSSEYGTSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212034g00002 389 MobiDBLite consensus disorder prediction 13 27 - -
Stsc212034g00002 389 Pfam Pex2 / Pex12 amino terminal region 44 276 IPR006845 -
Stsc212034g00002 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 386 IPR013083 -
Stsc212034g00002 389 MobiDBLite consensus disorder prediction 161 182 - -
Stsc212034g00002 389 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Stsc212034g00002 389 CDD RING-HC_PEX10 333 384 - -
Stsc212034g00002 389 Pfam Zinc finger, C3HC4 type (RING finger) 333 378 - -
Stsc212034g00002 389 SMART ring_2 335 372 IPR001841 -
Stsc212034g00002 389 FunFam Peroxisome biogenesis factor 10 314 386 - -
Stsc212034g00002 389 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 30 387 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Stsc212034g00002 389 ProSiteProfiles Zinc finger RING-type profile. 335 373 IPR001841 -
Stsc212034g00002 389 SUPERFAMILY RING/U-box 334 378 - -
Stsc212034g00002 389 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212034g00002 Stsc-Chr212034 24752 29799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212034g00002 282 385 C3H Transcription Factor Family AT3G58030 30.275 4.11e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212034g00002 K13346 - gmx:100783914 665.996