Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212034g00001 ATGGCACTTGATGTTGTCAAGTGTAATGTCATCAGAAAACGCAAAAGAGCATCGATGAAACGAAAACTTCTTGTTGATGACAGAGTTGAGGTGAGGAGTGTGGAAGATGGGTTTATGGGGTCATGGCACCCAGGTACAGTTATACAATCCGGCAAACAAAAGCGTCATGTGAGGTATGACAATGTGTTGGAAGACGATGGATCAAACTATGTTGTTGATGTGGTCGCTGTTTCGCCGGTTGTCGATGGTGGTGTTTCATATTCTAATAATGTCGAGCGTGGCTACATTAGGCCAATACCTCCATTATTCGAATTTGGTGGATGGGACCTCCCATTTGGACTCTGCGTCGACGTTAGTTACCAAGAAGCATGGTGGGAAGGTGTTGTTTTCGATCATTGCAACGGAATGGATGAGAGAAGGGTATTCTTCCCTGATTTGGGTGATGAGATGAAAGTTGGTATCAATAATTTGAGGATAACTCATGATTGGGATGAATTTGCAGACGATTGGAAGCCGAGGGGGAAGTGGGTTTTTCTTGAATTGATTGAGGAGTGTGAGAGGTTGTCCTATGTTGCTGTCTCGGTGAAGCAGATTTGGTACGATGTGAGGGTTAGGAAGGAGTTTGATAGCCTTATTAGGGATTGGACTTGTGATGAGAAGGAATTGTGGAGAGATCTTGTTATGGAGGTAGCCGGTGACTACTATGCTCTCACATTGCAAGACGTTTTGGCCGCGTTAAACCTTGAAATGGATTTCTCGGAAGAAGCACCAAGAACTGAGTTAGTTGAGGCTACTGCTAACGCTGATGGTGATTATGTTCCCGCTATTGCATTTGGTTCTTGCACAAGAACAACTGATACCTCTGAGGAGAAAGGCGACTCGGCAGATCTAATGGATTGTGATAAAAACTCCGGTAGCATTGATCCCATTCAAAAGGAAAACAATATGGATACTTTGATTGTTGGGGCCTCTAATGACCAAAATATGGCAGAGTTAAATATGAATGTACCTGAGGAGGAAGATGTGATGTCAAGAGAACCTATATCGCCAATTCAGCAAATTTTTCCTGAAGATCAAAAGAGAACTGCCAGCGGTAGACGTGTTCCTTCATCGGTGCTTTGGAAACCTTTGGTGCTGTCAGAAGTTGAATTCTGTCCTGAGATTATTCAGCAATACACACTTGGATGCGAGAGCAAGAAGGTTAGGGAACTCTTGAAGACAAAAGTGAGAAAACATCTTGCTTATATTGGATGGACAATTGAAGTGACTGAAGACAGGTATTTGCCCGGGCGACACAGATACAGATACAAACCACCTGGTGAACAAGGCGCGAAATTTTTCACTTCAATTGCCAAAGCTTGTAGATATATTAAGCAAAATGATCCTGTGGTGTCCCAAAATGACCTGGGTAGGATGCATGATATGGTGGATGGTAGCATTCTCAATCTTCTTTCTGATCAATCGCGTAGGAATCAGGTTAATGATTCTTATTCTTCTATGGTGGCATCTTCCTCTTCTGCAGAAGCTGTAGTTGAACCTGAATTTTTTCCAGAAGCTGTTGTGAAATATTACTTGCATGCATTAGAGAATCACCATGCCAATAAAAGGAAATGGAAATTGAAAGCAAAACAGCATCTGTTAGCAGAAGGATGGGTTTTGGACTATCCAACTGAGAAACGGAGGAGAATGTTGTACCACTCTCCGAAAAATCAGACTTTGGGAACACTTCAAGGTGCTTGCAGGCGATATATTAAAGAAAGTATTCCCAAATGGATGATTTCCGGCATCAGACCTTTGAATCTCCCAGTTGGTAGCGAAGAAAGTGTTCATAGAGATGATCTAGTCTCACTATTGCTTCAAAGGGAACCTGAATTACATGATGGATTGCCAGTGAGTACCTCAAATGGGAATAGGAGTGAAAACCATCCACGCTCAAGGAATCCAAAGAATAGCTCCCGAAAGCGCCAAGGGAAGGGAGTACCTACACGGGTGCTGAGATCAAGCAAGAGGGTGCAGAAAGTGCTTGCTCCTGGACTCTTACACCAAAAACCTCAAAACATTTTGTCTTGGTTAATTGATAACAACATATTGTCGACAAGGTATAAGGTCTATTGCAGGGGAAAACATGGCAAGAGTTCAATTGAGGCTGAGGGCCGCATAAGTCGTGAGGGGATCAAGTGCTGCTGTTGTCAAGAGATGTACAGTCTTTGTGGCTTTGCTAATCATGCTGATGCCAATAGTAACCACAGACCTTCTGCTAGTATCTTCTTGAAGGACGGCCGCTCGCTACTGGATTGCCAGATTCAAGTAATGCAAGATAAAAGGAAGGAGGAGAACATGAAAAAACAATCTAATGATCTTTGTCAAGGCGAAAATGACAACATTTGTTCTGTTTGTCAATATGGGGGTGAACTTGTCTTGTGCGATCAATGCCCGTCTGCATTTCATATGAGTTGTATAGGCTTGGCTGATCTTCCTGATGGTGACTGGTTTTGTCCATCTTGTCGATGCGGAATTTGCAGCCAAAGCAAAATCAAGGGGGACGAGGACGGACATTTTCTTAATTGCATTCAATGTGAACGTAAATATCATCTTGGGTGCTTGGGAAATAGAACAGTAGATGAATTAAGACATATGGCAAAGTGGTTCTGTGGAAACAAATGTGAACAGATATACACCAGCCTGCAGAAACTATTAGGAAAGTCAATTTCAGTGGATGCAAACAATCTAACTTGGACATTGGTCAAGTCTTTCAACTCTGAGAATTGTGATGTTGATTCTGCGAAAGACGAATACTTGGCAGAGAGTTACAGCAAACTCAATATTGCACTTTCTGTGATGCATGAATGCTTTGAGCCCCTACAGAACGCTTCCTCTAGCAGGGATCTCATGGAAGATGTCATATTCAGCAGATGGTCAGAGCTTAATAGAACGAATTTCCAGGGTTTCTACACTGTACTTCTTGAGAGAAATGAAGAACTGATAAGTGTGGCAACTTTTAGGGTGTATGGAGAGAAGGTCGCAGAAGTACCACTTGTAGGTACCAGATTTCAGTATCGTCGACTTGGAATGTGTCGCGTTTTAATGAATGAACTCGAAAAGATGCTCTCACAGCTAGGGGTGGAGAGGCTAGTTTTGCCTGCTGTTCCCAGTGTGCTCGATACATGGACCAATTCTTTTGGCTTCGACCCGATGACAGAATTCCAAAGATCACAGTTTCTGGACTACACTTTCCTTGATTTCCAAGGAACCACCATGTGCCAAAAACTGTTGAGAAAGGAGAGTCAATCTCCGGATTCGGTTATAACAAGAGAGATTCAGCCAGCATCAGGCTCTGTTAAATGTAAGATTGATTTTGAAAAGTTCAGTTCGGGATCGGATGAAGTATACCGAGCAGAGGATACTGATGAAACTAGAATGACAAATACGCAGATGGAGTATTTCTCGCCGTTGTCGACGATGACACAAGAAAATAAATCTGAATAA 3486 0.4269 MALDVVKCNVIRKRKRASMKRKLLVDDRVEVRSVEDGFMGSWHPGTVIQSGKQKRHVRYDNVLEDDGSNYVVDVVAVSPVVDGGVSYSNNVERGYIRPIPPLFEFGGWDLPFGLCVDVSYQEAWWEGVVFDHCNGMDERRVFFPDLGDEMKVGINNLRITHDWDEFADDWKPRGKWVFLELIEECERLSYVAVSVKQIWYDVRVRKEFDSLIRDWTCDEKELWRDLVMEVAGDYYALTLQDVLAALNLEMDFSEEAPRTELVEATANADGDYVPAIAFGSCTRTTDTSEEKGDSADLMDCDKNSGSIDPIQKENNMDTLIVGASNDQNMAELNMNVPEEEDVMSREPISPIQQIFPEDQKRTASGRRVPSSVLWKPLVLSEVEFCPEIIQQYTLGCESKKVRELLKTKVRKHLAYIGWTIEVTEDRYLPGRHRYRYKPPGEQGAKFFTSIAKACRYIKQNDPVVSQNDLGRMHDMVDGSILNLLSDQSRRNQVNDSYSSMVASSSSAEAVVEPEFFPEAVVKYYLHALENHHANKRKWKLKAKQHLLAEGWVLDYPTEKRRRMLYHSPKNQTLGTLQGACRRYIKESIPKWMISGIRPLNLPVGSEESVHRDDLVSLLLQREPELHDGLPVSTSNGNRSENHPRSRNPKNSSRKRQGKGVPTRVLRSSKRVQKVLAPGLLHQKPQNILSWLIDNNILSTRYKVYCRGKHGKSSIEAEGRISREGIKCCCCQEMYSLCGFANHADANSNHRPSASIFLKDGRSLLDCQIQVMQDKRKEENMKKQSNDLCQGENDNICSVCQYGGELVLCDQCPSAFHMSCIGLADLPDGDWFCPSCRCGICSQSKIKGDEDGHFLNCIQCERKYHLGCLGNRTVDELRHMAKWFCGNKCEQIYTSLQKLLGKSISVDANNLTWTLVKSFNSENCDVDSAKDEYLAESYSKLNIALSVMHECFEPLQNASSSRDLMEDVIFSRWSELNRTNFQGFYTVLLERNEELISVATFRVYGEKVAEVPLVGTRFQYRRLGMCRVLMNELEKMLSQLGVERLVLPAVPSVLDTWTNSFGFDPMTEFQRSQFLDYTFLDFQGTTMCQKLLRKESQSPDSVITREIQPASGSVKCKIDFEKFSSGSDEVYRAEDTDETRMTNTQMEYFSPLSTMTQENKSE 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212034g00001 1161 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 969 1072 IPR016181 -
Stsc212034g00001 1161 Gene3D - 933 1074 - -
Stsc212034g00001 1161 SMART agenet_At_2 21 83 IPR014002 -
Stsc212034g00001 1161 SMART agenet_At_2 108 165 IPR014002 -
Stsc212034g00001 1161 MobiDBLite consensus disorder prediction 1141 1161 - -
Stsc212034g00001 1161 SUPERFAMILY FYVE/PHD zinc finger 774 836 IPR011011 -
Stsc212034g00001 1161 CDD Tudor_Agenet_AtDUF_rpt1_3 25 101 - -
Stsc212034g00001 1161 ProSiteProfiles Zinc finger PHD-type profile. 793 838 IPR019787 -
Stsc212034g00001 1161 MobiDBLite consensus disorder prediction 1140 1161 - -
Stsc212034g00001 1161 CDD PHD_SF 836 888 - -
Stsc212034g00001 1161 Pfam Tify domain binding domain 718 769 IPR032308 -
Stsc212034g00001 1161 CDD NAT_SF 986 1046 - -
Stsc212034g00001 1161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 837 IPR013083 -
Stsc212034g00001 1161 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 930 1091 IPR000182 GO:0016747
Stsc212034g00001 1161 SMART PHD_3 795 836 IPR001965 -
Stsc212034g00001 1161 SMART PHD_3 837 889 IPR001965 -
Stsc212034g00001 1161 Pfam PHD-finger 795 837 IPR019787 -
Stsc212034g00001 1161 CDD PHD2_CHD_II 796 835 - -
Stsc212034g00001 1161 MobiDBLite consensus disorder prediction 626 667 - -
Stsc212034g00001 1161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 838 891 IPR013083 -
Stsc212034g00001 1161 PANTHER PHD FINGER PROTEIN 12 511 1143 IPR042163 GO:0003714|GO:0045892
Stsc212034g00001 1161 Pfam Agenet domain 27 101 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212034g00001 Stsc-Chr212034 18408 23900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212034g00001 32 1039 PHD Transcription Factor Family AT5G58610 35.034 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc212034g00001 Agenet 3.7e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212034g00001 - - adu:107471457 1953.72