Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212031g00003 ATGTATGTAAATTTTCTTGTTCCTTCCATGAACGAAGCCCGAATAGAAATCACGATCCCACACTTGTTCAGATGCCCAATAAGCTTAGACTTGTTGGAAGATCCAGTGACTCTATGCACAGGCCAAACCTATGACAGATCAAGCATTGAGAAATGGCTTTCTGCTGGTAACCTCACTTGCCCAGTCACAATGCAGAAGCTTCACGATCCTTCCATTGTTCCCAACCACACTCTCCGCCACTTGATCGACCAGTGGCTCCAACTCGGCCACCAATTCCACCCCGGAAACTCCGCAACAATCGATTACCTGACCGCTCTCAAGCACGCCCTCCAGTCTCCCAACTCCACCTTGGACCACAAGTTACAAGCACTCGACAAGATTCAAGTGCTCTCCAACGAGTACTGCTCCTTCAAGCGGTCGTGCTTCAACCAACTGAGCTATTTGACGGTTCTTCTAGAACTCGTTTTCCAGAGAAATTCCCAATACATGGAATTCACCGAGTTGGCACTCTCTTGCATCCTAAAGTTGCTTCCTCTCGTGAATTTGGATCCGCTGAACATGATCAAAGTCGAGCCGAATTTATCAACGTTAGTTTTATTATTGGAGAAGGGAACAACCAAGATCAAAACAAGCTTATGCCATCTTATAGAATCAACATCAACATCAACACAAACTCAAGAGCTATGCCACGTTCTTGGAAATTCAAGGAAGGTGATAGAAGAGATTGTTAAGCTAACTCGGGAAATCCATGAGGAGGATTCATCGAAAGCAGGAATCAAAGCCATGGCAGCATTATGCAGCTTGCAATCCAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGATGGAGTGATAGCATACATGTCAGGATGTGAGAAGAAGAATGTGGTGGGTCCAATGGCAATGGGGATAATAGAGAAGCTTGTGATGTTAGAGAGTGGGAAAGTGGGGGTGGTTGAGCACCCAAGTGGTGTTGAAACCGTGGTGAAAATGGTGTTCAGGGTTTGCAATAACCAAGAGTATTGGTGTAGTGAGGTTGCTGTTGGGGTGCTTTTGGTAATTTGCCGTGATTATGGAGTTGCAAGAGAGGAAGCCATTGGAGCTGGGATCTTGACTCAGTTGCTTTTCCTTCTTCAGAGTCAGTGTGGTAACAAAACCAAGACCAAGGCCAGGATGCTTCTCAAGCTCTTGAGATCGAAGTGGAACGACGAATCAAACAAGAAACTATGA 1230 0.4569 MYVNFLVPSMNEARIEITIPHLFRCPISLDLLEDPVTLCTGQTYDRSSIEKWLSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGHQFHPGNSATIDYLTALKHALQSPNSTLDHKLQALDKIQVLSNEYCSFKRSCFNQLSYLTVLLELVFQRNSQYMEFTELALSCILKLLPLVNLDPLNMIKVEPNLSTLVLLLEKGTTKIKTSLCHLIESTSTSTQTQELCHVLGNSRKVIEEIVKLTREIHEEDSSKAGIKAMAALCSLQSNRESLVRGGAIDGVIAYMSGCEKKNVVGPMAMGIIEKLVMLESGKVGVVEHPSGVETVVKMVFRVCNNQEYWCSEVAVGVLLVICRDYGVAREEAIGAGILTQLLFLLQSQCGNKTKTKARMLLKLLRSKWNDESNKKL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212031g00003 409 CDD RING-Ubox_PUB 20 67 IPR045210 -
Stsc212031g00003 409 FunFam RING-type E3 ubiquitin transferase 19 90 - -
Stsc212031g00003 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 94 IPR013083 -
Stsc212031g00003 409 ProSiteProfiles U-box domain profile. 18 92 IPR003613 GO:0004842|GO:0016567
Stsc212031g00003 409 Gene3D - 186 409 IPR011989 -
Stsc212031g00003 409 PANTHER WDSAM1 PROTEIN 16 404 IPR045185 GO:0061630
Stsc212031g00003 409 SMART Ubox_2 22 85 IPR003613 GO:0004842|GO:0016567
Stsc212031g00003 409 Pfam U-box domain 19 87 IPR003613 GO:0004842|GO:0016567
Stsc212031g00003 409 SUPERFAMILY ARM repeat 100 384 IPR016024 -
Stsc212031g00003 409 SUPERFAMILY RING/U-box 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212031g00003 Stsc-Chr212031 14783 16935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212031g00003 17 403 U-box Gene Family AT3G19380 33.911 1.26e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212031g00003 - - gmx:100815247 539.65