Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212023g00005 ATGCTTCCTTTTGGGGACAGATTCTACGGGTTCGAGAGCTGGCTAGACCATCCTCACCAACACGACTCATCATCATCACCCTCTGGGTTTGTTGTTCCTGAAGCACCTTTCAAGGCTACCGATCTATTATTTGACGGTGCAAGAAGATCAGCATCGTCCAAACTGGACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGGAAATCAACGGAAGCGTGCAAGAGCCACAGGGAAGCCGAGAGGAGGCGCAGGCAGCGAATCAACGCTCATCTTTCCACCCTTCGCTCCCTCCTCCCTAACACCGCCAAGGCAGATAAGGCGTCGTTGCTGGCGGAAGTGGTAAAGCACGTGAAGCGGCTGAAGAAAGAGGCCGATGACGTGGCGAGAGAACCGTCAAAAGCCGATGCAGAAGCTGAACCGTGGCCGTTTCCGGGGGAATCCGACGAGGCAACACTGAGCTACTGCGACGGCGAACCGAACCTGGTGAAGGCGACTCTGTGCTGCGAGGACCGGCCCGGTCTGAACCGGGACCTGACGCATGCGATTCGGTCAGTTCGAGCGAAAGCGGTACGGGCCGAGATGATGACGGTTGGGGGCCGGACCAAGAATGTGGTGATAATTCAACGGCCAGCGGCTTCCGGTGGTGGTGATTCGAAAGAAGGGGTGGAGGTTGGAGCTCTGGAGCGGGCTTTGAAGGCCGTGATTGAGAATCGGGCTTTAGTGGGCTCTGGGATGGGCCGTTTCCTGTTGGGTCAGAAGCGGGCTTGGGATAGTTATGATTCACGTGATGAGGTTGATTGCACCTTTTTGCTAAACACAGCTGCTAGCAAGTAA 858 0.5245 MLPFGDRFYGFESWLDHPHQHDSSSSPSGFVVPEAPFKATDLLFDGARRSASSKLDNNNNNNNNNNNNNNNNNNRKSTEACKSHREAERRRRQRINAHLSTLRSLLPNTAKADKASLLAEVVKHVKRLKKEADDVAREPSKADAEAEPWPFPGESDEATLSYCDGEPNLVKATLCCEDRPGLNRDLTHAIRSVRAKAVRAEMMTVGGRTKNVVIIQRPAASGGGDSKEGVEVGALERALKAVIENRALVGSGMGRFLLGQKRAWDSYDSRDEVDCTFLLNTAASK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212023g00005 285 MobiDBLite consensus disorder prediction 51 77 - -
Stsc212023g00005 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 143 IPR036638 GO:0046983
Stsc212023g00005 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 128 IPR011598 GO:0046983
Stsc212023g00005 285 PANTHER TRANSCRIPTION FACTOR BHLH30 59 251 IPR045847 GO:0003700|GO:0006355
Stsc212023g00005 285 MobiDBLite consensus disorder prediction 51 90 - -
Stsc212023g00005 285 Coils Coil 118 138 - -
Stsc212023g00005 285 MobiDBLite consensus disorder prediction 133 153 - -
Stsc212023g00005 285 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983
Stsc212023g00005 285 Gene3D - 73 137 IPR036638 GO:0046983
Stsc212023g00005 285 SMART finulus 85 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212023g00005 Stsc-Chr212023 25380 26851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212023g00005 76 244 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.552 3.48e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc212023g00005 HLH 1.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212023g00005 - - aip:107608273 454.907