Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212017g00001 ATGGGGTTGAAATTTGCAAAGCAGGGACCACAAAAAGTTGATGACCTGAATTTACAGAATCACATGATCAATTACCTTACCAGGAATTTTATTCGAAACTTGGTATCCAAGCAACGGAGGCGGATGCTCATCGCCGGCTATGATCTCGACATGACATATATCACAGACAGAATATTAGCAATGTCATTTCCTGCGGAGCGAATGCGCGCAGTGTATCGAAATCCTCTATGGCAGGTCAAATCTGTGTTGGACATGACACACCATGAACATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCGGCAAACTTTCATGGACGTGTCGAAGCATACCCTTTCGACGATAACCATGTTCCTCCCCTTGAAATGATCAAAGATTTTTGTGAAAGTGTGCATTCATGGCTATCAAGTGATCCGAAAAATATTGCTGTTATTCATTGCATGGCAGGGAAGGGTAGAACTGGCTTAATGGTGTGTTCATACCTAATTTATTCTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGAGAGAAGGACAACAAATAATGAAGGAGTATCAATACCAAGCCAACGCCGTTATGTAAGGTACTTTGAAAGCTTACTTTCTAGCCCCAGGGGCAAGGTGAGCTTGCCTCCACCATGTAGCAGAGAATTGCGCCGAATTCGCCTTTATGATACAGTTAACATCTATGCAATATTCTTTGTGATTTCAGAGCTGCAGGAGGAGGTTCCTAACCAGTGCTATCGGCCGCCGTTAACTGGAGATGTACGTGTGATATTCTATGAGAAATTGATAGGAGGCCGTCTCTTCTACTGCTGTTTTAATACATGTTTTGTTAAGAACAGCATATTACAGCTGGGAATAGAGGATTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGAACTGGTTTTAGCTTGGAATTACTGTTTGGGCCTGCTAATTCATCAAGTGTATGCACTAGTGACAATGCTAGTGATATTTCATTGTGA 1011 0.4154 MGLKFAKQGPQKVDDLNLQNHMINYLTRNFIRNLVSKQRRRMLIAGYDLDMTYITDRILAMSFPAERMRAVYRNPLWQVKSVLDMTHHEHYKIYNLCIEESYDPANFHGRVEAYPFDDNHVPPLEMIKDFCESVHSWLSSDPKNIAVIHCMAGKGRTGLMVCSYLIYSGMSADEALQLYAERRTTNNEGVSIPSQRRYVRYFESLLSSPRGKVSLPPPCSRELRRIRLYDTVNIYAIFFVISELQEEVPNQCYRPPLTGDVRVIFYEKLIGGRLFYCCFNTCFVKNSILQLGIEDLDKVGKKGRSICGTGFSLELLFGPANSSSVCTSDNASDISL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212017g00001 336 Pfam C2 domain of PTEN tumour-suppressor protein 254 317 IPR014020 -
Stsc212017g00001 336 SMART PTEN_C2_2 216 319 IPR014020 -
Stsc212017g00001 336 Gene3D Protein tyrosine phosphatase superfamily 26 210 IPR029021 -
Stsc212017g00001 336 Pfam Tyrosine phosphatase family 140 185 IPR026893 GO:0004721
Stsc212017g00001 336 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 254 319 IPR035892 -
Stsc212017g00001 336 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Stsc212017g00001 336 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Stsc212017g00001 336 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Stsc212017g00001 336 ProSiteProfiles C2 tensin-type domain profile. 182 320 IPR014020 -
Stsc212017g00001 336 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Stsc212017g00001 336 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 207 IPR029021 -
Stsc212017g00001 336 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 27 209 - -
Stsc212017g00001 336 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 26 327 - -
Stsc212017g00001 336 Gene3D - 241 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212017g00001 Stsc-Chr212017 1901 3857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212017g00001 257 322 Protein tyrosine phosphatase (PTP) family AT5G39400 63.636 2.39e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212017g00001 K01110 - gmx:100809938 435.647