Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212016g00007 ATGCTTGAAACTCTGGACCTTTCCAACAATGCTATAACTGGTAATGTGCCTAGTGTCTTGTTTTCTAGGCTTTCGAAGCTTCGAGTTCTTAATTTGAGTGGTAACTCTATTGATGGTGGTTTTCCTGATTCCTTGTGGTCATTACCGAGCTTGCGTTTCATTGATGTGTCCAACAATAGCCTTACCGGTCATCTGCCGAAGTTTTTCGGTTCAAATGCTAGCTCTACTGATGCCACATTCAATCTCTCAAACAACTTATTCTTTGGAACTCTAAATATTTCGGCTAAGAAGTTTAGAATGATTGATCTGTCCGGTAATTATTTGGAAGGCGAGGTGCAAGGTGTTAGTCTTAGTAATGTTAGTTTAGCAAGGAATTGCCTGGAGAATGCTCCAAACCAGAGGGATGTTAGTGTTTGTAGAGTGTTTTATGTGAAGAGAAATCTACCCTTTCCAGAATATTCGACAGCGAAAAAATCTTCCGGAAAGAAATTGATATTCATTCTGGCAGGTGTATTTGGTGGGCTTGGATTTATTTTGCTTCTGGCATTGGCCCTCATACTGTTCTTAAAACTATGTGGCAGCCATAAAAGCTTGGAAGTTCAAAGGGGGACTGAAAGTGGAGGGCCTGTTCCGGAAGGGGCGAGTCCTATGCCACCTAAAGACCTTGCATTCGACATTGCTGTCGGGGAACCATTTACATATGATCAAATTCTCAAGTTGACTGGTAATTTTGCTGATGCAAATATCATGAAACATGGTCATTCTGGAGACCTCTTCTGGGGAGTAATGGAAAACGGAGCTACTGTCGTCATCAAGAAGGTTGATTTGAGTTTGTTCAAGAGAGAATCATATGTTGTGGAATTGGAATTGTTAAGCAAGGCTTCACATGCAAGATTGATCCCAATCTTGGGGCATTGCTTGGAGAATGAGAATGAGAAATGTATAGTTTACAAGTATATGCCAAATGGAGATTTGGCAAGTTCTTTGCAGAGAGTCACTGATGCAGATGGTAAATCAAAGTCCCTTGATTGGATCACAAGATTGAAAATCGCTACGGGAGCTGCTGAAGGCCTTGCTTTTCTACACGATTGCAGCCCTCCCCTCGCTCACAGAGATGTTCAAGCTAGCAGCATACTTCTTGATGATAAATTTGAAGTGCGACTCGGAAGTTTGAGCGAGGTTACCACCCAAGGAGATCTTCTTCCGGGTGTCATGAACAGGCTGTTCAGCAAGCCATCATCTTCTAATCAACCAAATTTTGGCACATCATCAGTGACTTGGGCAGGTGATGTTTATGGTTTCGGTAAGATTTTGCTCGAGCTTATTACCGGAAATACTGAGGTCAGCAAATCGGACGATGCCACCTCACGAGAGTGGTTGGAGCAAACCTTGCCTTACATTAGCATAGATGATAAAGAACGGATAACCAAGATCGTCGACCCTTCTTTGATAGTAGATGAGGATCTACTAGAAGAAGTATGGGCTATGGCAATTGTGGCAAGATCATGCCTGAATCCTAGGCCTTCGAAACGTCCTCCTATGAGACACGTCCTCAAAGCGCTGGAAAATCCGTTGAAGGTTGTAAGAGAAGAAAATGCAAGCTCGGTGAAGTTGCGAGCAACTTCGTCTAGGAAGTCTTGGAGCACCGGATTGTTCGGTAGCTGGAGACAGAGCTCATCAGATAGTGTTACTGCAACAAACAAAGATAGTTCAAGTGGGACTAAACAATCAGGGAAAGTAAGTTCCCAAGGAAGTGGTGTAATGGATCACTCATCTTCTAATAAAAGATCATCCAAATCCAATGAAGTTTTCCCTGAACCATTGGGAACACATGATGTGGAGATTGGTGAGGGAAGATGA 1860 0.429 MLETLDLSNNAITGNVPSVLFSRLSKLRVLNLSGNSIDGGFPDSLWSLPSLRFIDVSNNSLTGHLPKFFGSNASSTDATFNLSNNLFFGTLNISAKKFRMIDLSGNYLEGEVQGVSLSNVSLARNCLENAPNQRDVSVCRVFYVKRNLPFPEYSTAKKSSGKKLIFILAGVFGGLGFILLLALALILFLKLCGSHKSLEVQRGTESGGPVPEGASPMPPKDLAFDIAVGEPFTYDQILKLTGNFADANIMKHGHSGDLFWGVMENGATVVIKKVDLSLFKRESYVVELELLSKASHARLIPILGHCLENENEKCIVYKYMPNGDLASSLQRVTDADGKSKSLDWITRLKIATGAAEGLAFLHDCSPPLAHRDVQASSILLDDKFEVRLGSLSEVTTQGDLLPGVMNRLFSKPSSSNQPNFGTSSVTWAGDVYGFGKILLELITGNTEVSKSDDATSREWLEQTLPYISIDDKERITKIVDPSLIVDEDLLEEVWAMAIVARSCLNPRPSKRPPMRHVLKALENPLKVVREENASSVKLRATSSRKSWSTGLFGSWRQSSSDSVTATNKDSSSGTKQSGKVSSQGSGVMDHSSSNKRSSKSNEVFPEPLGTHDVEIGEGR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212016g00007 619 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 522 - -
Stsc212016g00007 619 Gene3D Transferase(Phosphotransferase) domain 1 320 545 - -
Stsc212016g00007 619 Pfam Protein tyrosine and serine/threonine kinase 252 520 IPR001245 GO:0004672|GO:0006468
Stsc212016g00007 619 SUPERFAMILY Protein kinase-like (PK-like) 227 521 IPR011009 -
Stsc212016g00007 619 Pfam Leucine rich repeat 2 61 IPR001611 GO:0005515
Stsc212016g00007 619 MobiDBLite consensus disorder prediction 549 619 - -
Stsc212016g00007 619 MobiDBLite consensus disorder prediction 549 604 - -
Stsc212016g00007 619 ProSiteProfiles Protein kinase domain profile. 244 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212016g00007 619 SUPERFAMILY L domain-like 2 129 - -
Stsc212016g00007 619 Gene3D Phosphorylase Kinase; domain 1 223 319 - -
Stsc212016g00007 619 Gene3D Ribonuclease Inhibitor 1 147 IPR032675 -
Stsc212016g00007 619 FunFam Predicted protein 218 319 - -
Stsc212016g00007 619 PRINTS Leucine-rich repeat signature 24 37 - -
Stsc212016g00007 619 PRINTS Leucine-rich repeat signature 2 15 - -
Stsc212016g00007 619 FunFam Putative LRR receptor-like serine/threonine-protein kinase 320 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212016g00007 Stsc-Chr212016 28232 31641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212016g00007 2 71 Miscellaneous Gene Families AT2G16250 47.143 1.50e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Stsc212016g00007 PK_Tyr_Ser-Thr 3.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212016g00007 - - gmx:100815313 781.171