Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212016g00006 ATGAAGGTGAAGAAGTTGAAGAGTCACTCTGTTTCTTCAGCTACGTTTGTTTTTACCATTTTGCCCCTGTTCTTCTTCTTCTTCTTTGTTCAGTTCAGTTCTGCTTTGAATTCAAGCACTGAAAAACTGAGTTCAAGAACCGAATGGTTATCATTGCTTCAACTTCGATCTTCATTGGGTATAAGAGCAAAGAACTGGCCCAAAAAAACTGAACCGTGCCGGAACTGGACCGGGATTCATTGCCGAAACGGTTCAGTTATCGGAATTAATATCTCTAATTTCAGAAGAACATATAAAGCTAAGCTCCACCCAAGTTTCTCAGTTGATGCACTTGCCAATTTCACCCTCTTAGCTTCCTTCAATGCTTCAGGTTTTATGCTTAATGGTTCTATTCCTGATTGGTTTGGTGAGAACAACAATAACAATGGCAACTACCTTGGTGCACTCCAGGTGCTTGATTTAAGTTCTTGTGAAATAACTGGTTCAATTCCTGAGTCAATTGGTGGTTTGGTTTTGTTGAAGTCTCTGTTACTTTCTGATAATAGCTTAACTGGTAGAATGCCTTCAAGTTTGGGAATGTTGTCTAAGCTTTCTGTGCTTGATCTCTCAGGAAATGAACTTTCTGGGTCTATTCCTGATTCCTTGTTTTTGCTTGGTAACCTCACAAGTCTTAATCTTTCTTCCAATTACTTATCTGGGAATGTTCCGAATCGACTTGGTAACCTTTCAATGCTTGAAACTCTGGACCTTTCCAACAATGCTATAACTGGTAATGTGCCTAGTGTCTTGTTTTCTAGGCTTTCGAAGCTTCGAGTTCTTAATTTGAGTGGTAACTCTATTGATGGTGGTTTTCCTGATTCCTTGTGGTCATTACCGAGCTTGCGTTTCATTGATGTGTCCAACAATAGCCTTACCGGTCATCTGCCGAAGTTTTTCGGTTCAAATGCTAGCTCTACTGATGCCACATTCAATCTCTCAAACAACTTATTCTTTGGAACTCTAAATATTTCGGCTAAGAAGTTTAGAATGATTGATCTGTCCGGTAATTATTTGGAAGGCGAGGTGCAAGGTGTTAGTCTTAGTAATGTTAGTTTAGCAAGGAATTGCCTGGAGAATGCTCCAAACCAGAGGGATGTTAGTGTTTGTAGAGTGTTTTATGTGAAGAGAAATCTACCCTTTCCAGAATATTCGACAGCGAAAAAATCTTCCGGAAAGAAATTGATATTCATTCTGGCAGGTGTATTTGGTGGGCTTGGATTTATTTTGCTTCTGGCATTGGCCCTCATACTGTTCTTAAAACTATGTGGCAGCCATAAAAGCTTGGAAGTTCAAAGGGGGACTGAAAGTGGAGGGCCTGTTCCGGAAGGGGCGAGTCCTATGCCACCTAAAGACCTTGCATTCGACATTGCTGTCGGGGAACCATTTACATATGATCAAATTCTCAAGTTGACTGGTAATTTTGCTGATGCAAATATCATGAAACATGGTCATTCTGGAGACCTCTTCTGGGGAGTAATGGAAAACGGAGCTACTGTCGTCATCAAGAAGGTTGATTTGAGTTTGTTCAAGAGAGAATCATATGTTGTGGAATTGGAATTGTTAAGCAAGGCTTCACATGCAAGATTGATCCCAATCTTGGGGCATTGCTTGGAGAATGAGAATGAGAAATGTATAGTTTACAAGTATATGCCAAATGGAGATTTGGCAAGTTCTTTGCAGAGAGTCACTGATGCAGATGGTAAATCAAAGTCCCTTGATTGGATCACAAGATTGAAAATCGCTACGGGAGCTGCTGAAGGCCTTGCTTTTCTACACGATTGCAGCCCTCCCCTCGCTCACAGAGATGTTCAAGCTAGCAGCATACTTCTTGATGATAAATTTGAAGTGCGACTCGGAAGTTTGAGCGAGGTTACCACCCAAGGAGATCTTCTTCCGGGTGTCATGAACAGGCTGTTCAGCAAGCCATCATCTTCTAATCAACCAAATTTTGGCACATCATCAGTGACTTGGGCAGGTGATGTTTATGGTTTCGGTAAGATTTTGCTCGAGCTTATTACCGGAAATACTGAGGTCAGCAAATCGGACGATGCCACCTCACGAGAGTGGTTGGAGCAAACCTTGCCTTACATTAGCATAGATGATAAAGAACGGATAACCAAGATCGTCGACCCTTCTTTGATAGTAGATGAGGATCTACTAGAAGAAGTATGGGCTATGGCAATTGTGGCAAGATCATGCCTGAATCCTAGGCCTTCGAAACGTCCTCCTATGAGACACGTCCTCAAAGCGCTGGAAAATCCGTTGAAGGTTGTAAGAGAAGAAAATGCAAGCTCGGTGAAGTTGCGAGCAACTTCGTCTAGGAAGTCTTGGAGCACCGGATTGTTCGGTAGCTGGAGACAGAGCTCATCAGATAGTGTTACTGCAACAAACAAAGATAGTTCAAGTGGGACTAAACAATCAGGGAAAGTAAGTTCCCAAGGAAGTGGTGTAATGGATCACTCATCTTCTAATAAAAGATCATCCAAATCCAATGAAGTTTTCCCTGAACCATTGGGAACACATGATGTGGAGATTGGTGAGGGAAGATGA 2589 0.4191 MKVKKLKSHSVSSATFVFTILPLFFFFFFVQFSSALNSSTEKLSSRTEWLSLLQLRSSLGIRAKNWPKKTEPCRNWTGIHCRNGSVIGINISNFRRTYKAKLHPSFSVDALANFTLLASFNASGFMLNGSIPDWFGENNNNNGNYLGALQVLDLSSCEITGSIPESIGGLVLLKSLLLSDNSLTGRMPSSLGMLSKLSVLDLSGNELSGSIPDSLFLLGNLTSLNLSSNYLSGNVPNRLGNLSMLETLDLSNNAITGNVPSVLFSRLSKLRVLNLSGNSIDGGFPDSLWSLPSLRFIDVSNNSLTGHLPKFFGSNASSTDATFNLSNNLFFGTLNISAKKFRMIDLSGNYLEGEVQGVSLSNVSLARNCLENAPNQRDVSVCRVFYVKRNLPFPEYSTAKKSSGKKLIFILAGVFGGLGFILLLALALILFLKLCGSHKSLEVQRGTESGGPVPEGASPMPPKDLAFDIAVGEPFTYDQILKLTGNFADANIMKHGHSGDLFWGVMENGATVVIKKVDLSLFKRESYVVELELLSKASHARLIPILGHCLENENEKCIVYKYMPNGDLASSLQRVTDADGKSKSLDWITRLKIATGAAEGLAFLHDCSPPLAHRDVQASSILLDDKFEVRLGSLSEVTTQGDLLPGVMNRLFSKPSSSNQPNFGTSSVTWAGDVYGFGKILLELITGNTEVSKSDDATSREWLEQTLPYISIDDKERITKIVDPSLIVDEDLLEEVWAMAIVARSCLNPRPSKRPPMRHVLKALENPLKVVREENASSVKLRATSSRKSWSTGLFGSWRQSSSDSVTATNKDSSSGTKQSGKVSSQGSGVMDHSSSNKRSSKSNEVFPEPLGTHDVEIGEGR 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212016g00006 862 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515
Stsc212016g00006 862 Gene3D Transferase(Phosphotransferase) domain 1 563 787 - -
Stsc212016g00006 862 FunFam Putative LRR receptor-like serine/threonine-protein kinase 563 784 - -
Stsc212016g00006 862 Pfam Protein tyrosine and serine/threonine kinase 495 763 IPR001245 GO:0004672|GO:0006468
Stsc212016g00006 862 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Stsc212016g00006 862 FunFam Predicted protein 461 562 - -
Stsc212016g00006 862 Gene3D Phosphorylase Kinase; domain 1 466 562 - -
Stsc212016g00006 862 FunFam MDIS1-interacting receptor like kinase 2 isoform A 161 263 - -
Stsc212016g00006 862 MobiDBLite consensus disorder prediction 792 847 - -
Stsc212016g00006 862 Gene3D Ribonuclease Inhibitor 214 390 IPR032675 -
Stsc212016g00006 862 MobiDBLite consensus disorder prediction 792 862 - -
Stsc212016g00006 862 SMART LRR_typ_2 291 314 IPR003591 -
Stsc212016g00006 862 SMART LRR_typ_2 267 290 IPR003591 -
Stsc212016g00006 862 SMART LRR_typ_2 194 218 IPR003591 -
Stsc212016g00006 862 SMART LRR_typ_2 242 266 IPR003591 -
Stsc212016g00006 862 SMART LRR_typ_2 146 170 IPR003591 -
Stsc212016g00006 862 SUPERFAMILY Protein kinase-like (PK-like) 470 764 IPR011009 -
Stsc212016g00006 862 SUPERFAMILY L domain-like 146 368 - -
Stsc212016g00006 862 Pfam Leucine rich repeat 245 304 IPR001611 GO:0005515
Stsc212016g00006 862 Pfam Leucine rich repeat 173 231 IPR001611 GO:0005515
Stsc212016g00006 862 Pfam Leucine rich repeat N-terminal domain 50 81 IPR013210 -
Stsc212016g00006 862 Gene3D Ribonuclease Inhibitor 45 213 IPR032675 -
Stsc212016g00006 862 PRINTS Leucine-rich repeat signature 242 255 - -
Stsc212016g00006 862 PRINTS Leucine-rich repeat signature 197 210 - -
Stsc212016g00006 862 ProSiteProfiles Protein kinase domain profile. 487 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212016g00006 862 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 114 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212016g00006 Stsc-Chr212016 28082 31641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212016g00006 47 655 Miscellaneous Gene Families AT2G16250 46.954 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Stsc212016g00006 PK_Tyr_Ser-Thr 7.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212016g00006 - - aip:107635843 1118.22