Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212015g00006 ATGTCGTCGGAGCCACTGATTACGCCACCCGGCGACGACGCATTCCGGCGTTCCCACTCTTTCCGGCAATGCGGCGAACCGGCCACGCCGATTTTCGACGAATTGCCGAAAGCGATAATCGTTTCGGTGTCACGACCGGAGACCGGGGAAATTAGCCCAATCTTGCTCTCTTATACAATTGAATTGGAGTACAAGCAGTTCAAGTGGCGTCTTCACAAGAGAGCAGCACAAGTTCTCTACTTACAGTTTGCTCTGCGGAAACGTGCGCTAATTGAACAACTTCATGACAAACAAGAGCAGATAAAAGAATGGCTTCAGAGCTTAGGAATAGTGGATCACATGGTGACGATACACGATGACGAAGAACCTGATGATGGAGCTGTGCCTTTACATCATGAAGACAGTGTTAAAAGCAGATATGTGCCGTCTGTTGCTGCTCTGTCAATAATTCGTCCATCATTAGGAGGGCAACAATCGGTTGTAGATAGGGCAAAAGTCGCAATGCAAAGTTATCTGAATCTTTTCTTAGAAAAGCTGGATATTGTGAATTCTCCAGAGGTCTGCAGGTTTTTGGAAGTCTCCAAGCTATCCTTTATACATGAGTATGGTCCAAAATTGAGAGAGGGATATGTGACAGTGAAGCATTTGTCAAATATTTCACCAGATTCAGAACGCCAATTGATACCTCAGTTTGGCAGCATATTATCCAATAAACCACTGGACATACTTGTTTTTGATGTCCTCCCATCCTCAAAAGGAGATAAAGGGACACAAATACTTTTAGCTGATCCTGTAAAGGAATGTAATCCTTTGCGATACACATTTAAGGTTACTAGTGGGAATAGGAGCATATCATTGAGAACTACCAGCAATGGCAGGGTTAAAGCTTGGGTAAATGCAATTAATGAAGCTGGTCTTCGACCTTCGGAGGGTTGGTGTTGTCCTCATCGGTTTGCTTCATTTGCTCCTGTAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTGGACGGAAAGGCAGCATTTGAAGCAATTGCTTCTTCAATTCAAGGTGCAAAATCAGAGATCTTCATTACAGGATGGTGGCTTTGCCCTGAGCTATATCTCAAACGTCCTTTTGATTGCTATTCAAACTTCAGACTTGACTCACTGCTGGAGGAAAAAGCCAAGCAAGGAATTCAGATATATGTGCTTCTCTACAAGGAGGTTTCTCTGGCTTTGAAAATCAACAGCTCGTATAGTATGAGAAGACTCCTCAAAATTCATGAGAATGTGAGGGTATTGCGCTATCCTGATCATTTAACCAGTGGCGTGTATTTATGGTCTCACCATGAGAAACTTGTAATAGTTGATAACAAGATTTGTTATATTGGAGGATTAGACTTATGCTTCGGTCGATATGACACGCCTGATCATGAAGTTGGTGATTGCCCCTCTGTAACATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCATGGGAAGACACGATGAGAGATGAATTGGATCGTGAGAAATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTTTGGGGACCTCCCTGTCATGATATTGCTCGACATTTCGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAAATCCCACTACTTATGCCTCACCATCACATGGTACTCCCTCATTACATGGGAAAAAGCAAAGATATGGACATTGATGGAAAGAAAGATGATGGCGAAAAAGACCTTGAGAGTAAGGATTCATTTTCGGAGTCTCCGGTACAAGATATACCACTGCTTTTACCTCAAGAATCTGGTGGACTAGTTACTTCACTCGGAGATCATAATGATAGTGAAAAGGTTTCATTATCATCCCAAAACTTGGAACAGGAAAAAATAACTCCAGACACAAAGATTAATGGGTTTCAAGATGAAGTTGTTCCTGTTGACCTTGGTGCACAATCTGTGGTTCATGATCTAGACAACTGGTGGGAAACACCAGACGAAGGTACCAGTGACGATAATAATTTGGAATATGGACAAGTTGGTCCACGTACTACCTGCCGCTGTCAGGTAATCAGAAGTGTCAGCCAATGGTCTGCTGGAACCAGTCAGCATGAAGAAAGCATTCACACAGCATATTGTTCTCTTATTGAAAAGGCAAAGCATCTTATCTACATTGAGAACCAATTTTTCATATCGGGTCTAGAAAATGATGACACAATTCAGAACCGTGTATTGGAAGCACTATACAGGCGCATTTTACAAGCAAACAAGGAACAGAATGAATTTAGAGTTATAGTTGTGATGCCCCTCTTGCCTGGTTTCCAAGGTGGTCTAGATGATGGTGGTGCTGCAACTGTCAGGGCCTTAACACATTGGCAGTATAGAACAATTTCAAGGGAAAAGCATTCCATATTACACAATCTTGAAGCTAAAATTGGTTCAAAGGCTCATGATTATATTTCTTTCTATGGTCTACGGTCTCACGGTAGACTTCGTGCTAACGGTTCAGTGGCCACAAGTCAGGTATATGTGCATAGTAAATTGATGATAATAGATGACCGGGTATCTATCATTGGATCGTCTAATATTAACGACCGCAGTCTGCTTGGGTTAAGAGACTCTGAG 2649 0.4262 MSSEPLITPPGDDAFRRSHSFRQCGEPATPIFDELPKAIIVSVSRPETGEISPILLSYTIELEYKQFKWRLHKRAAQVLYLQFALRKRALIEQLHDKQEQIKEWLQSLGIVDHMVTIHDDEEPDDGAVPLHHEDSVKSRYVPSVAALSIIRPSLGGQQSVVDRAKVAMQSYLNLFLEKLDIVNSPEVCRFLEVSKLSFIHEYGPKLREGYVTVKHLSNISPDSERQLIPQFGSILSNKPLDILVFDVLPSSKGDKGTQILLADPVKECNPLRYTFKVTSGNRSISLRTTSNGRVKAWVNAINEAGLRPSEGWCCPHRFASFAPVRGLTEDGSQAQWFVDGKAAFEAIASSIQGAKSEIFITGWWLCPELYLKRPFDCYSNFRLDSLLEEKAKQGIQIYVLLYKEVSLALKINSSYSMRRLLKIHENVRVLRYPDHLTSGVYLWSHHEKLVIVDNKICYIGGLDLCFGRYDTPDHEVGDCPSVTWPGKDYYNPRESEPNSWEDTMRDELDREKYPRMPWHDVHCALWGPPCHDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVLPHYMGKSKDMDIDGKKDDGEKDLESKDSFSESPVQDIPLLLPQESGGLVTSLGDHNDSEKVSLSSQNLEQEKITPDTKINGFQDEVVPVDLGAQSVVHDLDNWWETPDEGTSDDNNLEYGQVGPRTTCRCQVIRSVSQWSAGTSQHEESIHTAYCSLIEKAKHLIYIENQFFISGLENDDTIQNRVLEALYRRILQANKEQNEFRVIVVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILHNLEAKIGSKAHDYISFYGLRSHGRLRANGSVATSQVYVHSKLMIIDDRVSIIGSSNINDRSLLGLRDSE 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212015g00006 883 CDD PLDc_vPLD1_2_yPLD_like_2 708 883 - -
Stsc212015g00006 883 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 848 875 IPR001736 GO:0003824
Stsc212015g00006 883 MobiDBLite consensus disorder prediction 615 633 - -
Stsc212015g00006 883 PANTHER PHOSPHOLIPASE D 165 883 IPR015679 -
Stsc212015g00006 883 Gene3D Endonuclease Chain A 327 563 - -
Stsc212015g00006 883 Gene3D Endonuclease Chain A 669 883 - -
Stsc212015g00006 883 MobiDBLite consensus disorder prediction 572 633 - -
Stsc212015g00006 883 PIRSF PLD_euk 481 601 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc212015g00006 883 PIRSF PLD_euk 651 883 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc212015g00006 883 PIRSF PLD_euk 230 487 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc212015g00006 883 PIRSF PLD_euk 36 233 IPR016555 GO:0004630|GO:0006654|GO:0048017
Stsc212015g00006 883 SMART pld_4 441 468 IPR001736 GO:0003824
Stsc212015g00006 883 SMART pld_4 848 875 IPR001736 GO:0003824
Stsc212015g00006 883 Coils Coil 87 107 - -
Stsc212015g00006 883 Pfam Phospholipase D Active site motif 441 468 IPR001736 GO:0003824
Stsc212015g00006 883 FunFam Phospholipase 681 883 - -
Stsc212015g00006 883 Pfam PLD-like domain 721 878 IPR025202 -
Stsc212015g00006 883 SUPERFAMILY Phospholipase D/nuclease 686 881 - -
Stsc212015g00006 883 MobiDBLite consensus disorder prediction 572 595 - -
Stsc212015g00006 883 CDD PLDc_vPLD1_2_yPLD_like_1 334 479 - -
Stsc212015g00006 883 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 441 468 IPR001736 GO:0003824
Stsc212015g00006 883 SUPERFAMILY Phospholipase D/nuclease 292 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212015g00006 Stsc-Chr212015 28947 35753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212015g00006 31 883 Phospholipase D Gene Family (Wang group) AT3G16785 64.149 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212015g00006 K01115 - gmx:100796914 1396.72