Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212015g00003 ATGATCCACGAGGACACGGTCAATTCGACTACACGACTTCCCTCTGTACCATGTACTCTTCCCCCTGACTTCGGCCGCTACTCGAAGCTTGAAATCTTTCATGTTGGAGACAATGATTTTATTGGAAAGCTTCCAGAGAACTTGTGTTATTATGGTGTGTTGCAAAATTTAACTGTCTATGAAAATAATCTGAATGGGGAGTTACCACAATCACTAGGAAATTGTAGAGCCCTGCAGGACCTGAAAATCCAGAAGAATGGATTTTCTGGTGTCATTCCTAGTGGCCTATGGACATCTTTCAATTTGTCAAATTTCATTCTAGCTAGTAATAAGTTTAGTGGTGAGCTTCCTGAAAGATTGTCTGCGAATATTTCGCGATTTGATATCAGTGACAATCAGTTTTCTCGTAGAATTCCAGCTGGAGTGTCTTCCTGGACCAATGTGGAATACTTCGATGCCAGCAAAAACAACCTTACTGGAAGTATTCCACCTGGGATTACTGCTCTTCCCAAGCTACTATACCTCAATCTTCATCAGAACCAACTCAACGGGCCATTTCCATCAGATATATTTTCATGGAAGTCCCTAGAAATTATAGTTTTGAGCCGGAACAAACTCTCAGGACAAATTCCAGTTATGATTGGCCGGTTACCTGCTCTCAATGTTCTTGACCTCTCAGAAAATCAATTCTCTGGCCAAATTCCTTCTTTACCTTCAACACTAAGCAATTTCAATCTGTCTTCCAATCACTTGACAGGGAGGATTCCGAGTGATTTCGAAAATCCTGCATATGCTACTTGCTTTTTGGTCAACCCTGGCCTCTGTGCTGCTACTCGAGTACTTAACCTTGCGCTGTGTAATGCTAGCTCTCAAAGGCCAACCAAAGGCTCATCTTGGTCTCTTGGTTTGATTATAGGCCTGGTGGTTATAGCTTTCTTGCTGGCTTCATTAGCTGCATTCTTGATTATCAGATTTTACAGCAAAAGGAACCGAGGACTGGACAACTCATGGAAGCTCATTTCCTTTCAAAGGCTAAGTTTCAGAGAATCAAGCATAGTATCATCATTGACAGAGAATAATATCATTGGCAGCGGTGGATACGGTACAGTTTACCGTGTGCCTGTTGATGGATTAGGCTATGTTGCAGTCAAGAAGATTTTGAACAACAGAAAGTTAAACCACAGGCTTGAGAGTTCGTTTCACGCAGAGGTCAAGATATTGAGCAATATTCGTCATGGCAACATTGTGAAGTTGTTGTGCTGTATCTTCAATGAGGATTCCATGCTCCTTGTCTATGAGTAA 1302 0.4178 MIHEDTVNSTTRLPSVPCTLPPDFGRYSKLEIFHVGDNDFIGKLPENLCYYGVLQNLTVYENNLNGELPQSLGNCRALQDLKIQKNGFSGVIPSGLWTSFNLSNFILASNKFSGELPERLSANISRFDISDNQFSRRIPAGVSSWTNVEYFDASKNNLTGSIPPGITALPKLLYLNLHQNQLNGPFPSDIFSWKSLEIIVLSRNKLSGQIPVMIGRLPALNVLDLSENQFSGQIPSLPSTLSNFNLSSNHLTGRIPSDFENPAYATCFLVNPGLCAATRVLNLALCNASSQRPTKGSSWSLGLIIGLVVIAFLLASLAAFLIIRFYSKRNRGLDNSWKLISFQRLSFRESSIVSSLTENNIIGSGGYGTVYRVPVDGLGYVAVKKILNNRKLNHRLESSFHAEVKILSNIRHGNIVKLLCCIFNEDSMLLVYE 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212015g00003 433 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 433 - -
Stsc212015g00003 433 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 163 283 - -
Stsc212015g00003 433 Gene3D Phosphorylase Kinase; domain 1 344 433 - -
Stsc212015g00003 433 FunFam Kinase family with leucine-rich repeat domain-containing protein 338 433 - -
Stsc212015g00003 433 Pfam Protein kinase domain 358 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212015g00003 433 SUPERFAMILY L domain-like 19 262 - -
Stsc212015g00003 433 Gene3D Ribonuclease Inhibitor 15 284 IPR032675 -
Stsc212015g00003 433 SUPERFAMILY Protein kinase-like (PK-like) 353 433 IPR011009 -
Stsc212015g00003 433 ProSiteProfiles Protein kinase domain profile. 356 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212015g00003 433 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212015g00003 Stsc-Chr212015 5013 6679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212015g00003 20 433 Receptor kinase-like Gene Family AT5G25930 47.518 1.26e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc212015g00003 Pkinase 1.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212015g00003 - - gmx:100813894 557.755