Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212015g00002 ATGTCTGGTAAAGTCAATCATTTTGTCCTTGATTGGCCAAAGAGATTGAAAATAGCCATTGGTGTTGCCCAGAGTCTAACATACATGCACCATGATTGCTCGCCGCCTGTGGTTCATAGAGACATAAAAACAAGCAACATACTTTTGGATTCTCAGTTCAATGCAAAAGTTGCAGATTTTGGTCTTGCAAGGACGATGATCAAGCCCCATACCACCATGACAAGTGTTGTTGGCTCATTTGGATATATTGCTCCAGAGTATGTTCAAACAACAAAAGTGAGCGAAAAGGTTGATGTCTTCAGCTTTGGGGTTATACTATTGGAATTAACAACTGGAAAAGAAGCTAATTATGGAGATGAGCACTCATCTCTTGCAGAGTGGGCATGGCGCCATGTTCAGATAGGAACCAACATAGAAGAACTGCTGGACACTGATGTCATGGAGGCTAGTTACACTGATGAAATGTGCAGTGTTTTCAAACTTGGGGTCATGTGTACTTCCCCATTGCCTGCTGGTAGGCCTCAAATCAAGGAGGTTCTGCAACTGTTGCATCGATTCGGCGAAGGATTCGCATTTAGAGAGAGAAATATTGGGAAATATGAGATTATTGTTGGGTTTGGTTGA 624 0.4231 MSGKVNHFVLDWPKRLKIAIGVAQSLTYMHHDCSPPVVHRDIKTSNILLDSQFNAKVADFGLARTMIKPHTTMTSVVGSFGYIAPEYVQTTKVSEKVDVFSFGVILLELTTGKEANYGDEHSSLAEWAWRHVQIGTNIEELLDTDVMEASYTDEMCSVFKLGVMCTSPLPAGRPQIKEVLQLLHRFGEGFAFRERNIGKYEIIVGFG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212015g00002 207 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212015g00002 207 Gene3D Transferase(Phosphotransferase) domain 1 3 196 - -
Stsc212015g00002 207 SUPERFAMILY Protein kinase-like (PK-like) 7 183 IPR011009 -
Stsc212015g00002 207 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 185 - -
Stsc212015g00002 207 Pfam Protein kinase domain 17 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212015g00002 207 FunFam Leucine-rich repeat receptor-like protein kinase 1 196 - -
Stsc212015g00002 207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Stsc212015g00002 207 SMART serkin_6 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212015g00002 Stsc-Chr212015 4252 4961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212015g00002 3 187 Receptor kinase-like Gene Family AT5G25930 59.788 1.67e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc212015g00002 Pkinase 4.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212015g00002 - - gmx:100813894 317.005