Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212014g00007 ATGTTATCTGAGGTTTATCTTGGCATCAATAATTTGGAAGGAAGCCTTCCATCTAACCTTAGATATTGCACCATGATGCAGAAATTTGTTGTTGACACAAACAACTTAAGTGGTAACATACCCAATGAGACATTTGGGTATCAAAAAAGTTTAATAACTCTTGACTTATCCATCAATGCCTTGACTGGTCCCATTCCTTCAGATTTTGGTAACTTGAAACAACTTTCCATACTTTATCTGCATACAAACAATTTGTCTGGTGAAGTTCCCATGGAACTTGGTGCTTGTTCTGCTTTAACAGACTTTTGGCTGAAAAGGAACTTCTTTCATGGAAGTATACCTTCATTCTTTGGTTCTCTAAGAAACCTTGAAATCTTAGACTTTTCAATCAATAACTTCTCAGGCACAATTCCAAATGAACTTGAGAATCTGACTTTTTTGCATCATATGAACTTGTCTTTTAACCATCTTTATGGTGAGGTCCCAATAGGAGGAATCTTTAGAAACATCACAGAAATGTCATTCATTGGAAACAAAGATCTATGTGGTGGAATACCTCACCTGAATCTCCCTCCATGCCCTGAGTTGCTTTCACATAAACATAAGAGGTCTTTTAAAGTTACCCTCATCATTGTAATTAGTGGGATTGTGGCATCTTTTGTGGTTTTCATATCCATTTGTTATTTGAGAAAAAAGCCCAAAACTTTATCTTCTTCACCATCATTGGAGCATAGGTACTTGAAGGTTTCTTATGGAGAGCTGCATCAAGCAACAGGTGGATTTTCTTCCTTAAATTTAGTTGGCGCAGGAAGCTTTGGTTCTGTATATAAAGGAACCCTTGCCCATTTTGAAAGACCTATTGCTGTGAAGGTGTTGAATCTTCAAACGCATGGGGCATCAAAGAGTTTCGTGGCCGAATGCAAAGCTCTCGGAAAAATCAGGCACCGGAATCTTCTCAATATACTGACTTGTTGCTCAAGTCTCGATTATAAAGGTGATGATTTTAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACCTTGCTGCACAACAATGAAGATAGGGAGTCCAAAAATCTGAAGCTCAACTTTATTCAAAGGGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGACTCTGAAGAAGCTATAGTTCATTGCGATGTGAAACCGAGCAATGTTCTTCTTGATGATGACATGGTTGCCCACTTGGGGGATTTTGGGCTTGCTAGGCTTCTTCATGATCATGGAGGCACTCATGGTTCTAGCACAGATCAAGCTAGTTCATCTGTAATTAAGGGAACTATTGGATATGTTCCACCCGAGTATGGAGCAGGATCTCCAGTCTCAGCAGAAGGAGACATTTATAGTTATGGAGTTCTTCTTCTGGAGATGATCACCGGAAAGAAGCCAACTGATAGCATATTTGGTGAAGGTTTGAGCCTTCACAAGTTCTGCAGAAGGGCAATGCCTGAAGGAATCACTGACATTGTTGATTCGAGATTGCTGACTGTATTTGATGAAGGGGAAAGAAGGATCACACAACAGCATAATTTGGAAGACAACATTGTAGAGTGTCTTGTGTCCTTTGCTAGGATTGGAGTAGCATGTTCTCAAGAGTTTTCTAATCAAAGAATGAGCATAAAAGATGTCATAATTTAG 1686 0.3903 MLSEVYLGINNLEGSLPSNLRYCTMMQKFVVDTNNLSGNIPNETFGYQKSLITLDLSINALTGPIPSDFGNLKQLSILYLHTNNLSGEVPMELGACSALTDFWLKRNFFHGSIPSFFGSLRNLEILDFSINNFSGTIPNELENLTFLHHMNLSFNHLYGEVPIGGIFRNITEMSFIGNKDLCGGIPHLNLPPCPELLSHKHKRSFKVTLIIVISGIVASFVVFISICYLRKKPKTLSSSPSLEHRYLKVSYGELHQATGGFSSLNLVGAGSFGSVYKGTLAHFERPIAVKVLNLQTHGASKSFVAECKALGKIRHRNLLNILTCCSSLDYKGDDFKAIVFEFMPNGSLETLLHNNEDRESKNLKLNFIQRVNIALDVAFALDYLHNDSEEAIVHCDVKPSNVLLDDDMVAHLGDFGLARLLHDHGGTHGSSTDQASSSVIKGTIGYVPPEYGAGSPVSAEGDIYSYGVLLLEMITGKKPTDSIFGEGLSLHKFCRRAMPEGITDIVDSRLLTVFDEGERRITQQHNLEDNIVECLVSFARIGVACSQEFSNQRMSIKDVII 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212014g00007 561 SUPERFAMILY L domain-like 2 183 - -
Stsc212014g00007 561 ProSiteProfiles Protein kinase domain profile. 261 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00007 561 FunFam Leucine-rich repeat receptor protein kinase EMS1 90 188 - -
Stsc212014g00007 561 Pfam Leucine rich repeat 31 85 IPR001611 GO:0005515
Stsc212014g00007 561 SMART serkin_6 261 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00007 561 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 343 561 - -
Stsc212014g00007 561 Gene3D Phosphorylase Kinase; domain 1 224 342 - -
Stsc212014g00007 561 Gene3D Transferase(Phosphotransferase) domain 1 343 561 - -
Stsc212014g00007 561 PANTHER OS04G0122200 PROTEIN 2 549 - -
Stsc212014g00007 561 Pfam Protein kinase domain 263 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00007 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Stsc212014g00007 561 Gene3D Ribonuclease Inhibitor 1 202 IPR032675 -
Stsc212014g00007 561 ProSitePatterns Protein kinases ATP-binding region signature. 267 290 IPR017441 GO:0005524
Stsc212014g00007 561 FunFam LRR receptor-like serine/threonine-protein kinase EFR 232 342 - -
Stsc212014g00007 561 SUPERFAMILY Protein kinase-like (PK-like) 234 559 IPR011009 -
Stsc212014g00007 561 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212014g00007 Stsc-Chr212014 28582 30409 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212014g00007 1 560 Receptor kinase-like Gene Family AT3G47570 44.328 1.27e-150 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc212014g00007 Pkinase 3.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212014g00007 - - ahf:112766919 776.933