Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212014g00005 ATGGCTGTGCAAGTGCCTTTGAGTTCTGAGATTGATAAGCTTGCTTTGCTTGCTTTGAAGGGAAAGCTAACCAATGGTGATCCTGATGCTCTACCATCATGGAATGAGTCTCTCCATTTTTGTGAATGGGAGGGTGTTACATGCAGTCGCCGCCACATGAGAGTCTCAGCCTTGCAACTGCAAAATCAAGACTTCGGTGGTACTCTTGGGCCATCCTTGGGAAACCTAACCTTTCTTGTAGAGCTCAATCTTACTGACCTCAACTTGTATGGTGATATTCCAAGAGAAGTTGGTCATTTAAAGAGGTTGCAGATTCTTAGCTTGATGCAGAATAACATTTTTGGTGAGATTCCAAGGGAACTTGGTCGCTTAAAGCGGTTGCAATTTCTTGAATTAAAGAAGAATAATTTTCATGGTGAGATTCCTATGGAGCTGGCCAACTGCTCAAGTCTTAATAAAATTGACTTGTCGAGCAACAATTTAACTGGGGAAGTTCCCTCATGGTTTGGATCTATGATGCAACTTTCATTTTTGGAGCTTGCATTCAATAATCTAGTTGGTAACATCCCTCCAACTTTGGGGAATCTTTCTTCACTTAATACATTGTCACTTGCAAACAATTTCTTGGAAGGTCCTATAATTCAGGCTTTAGGGAGGTTGACGAATTTGGTATTCATATCTTTGACTTACAATAATTTGTCTGGCCAAGTTCCTAGTTCCTTTTACAACCTTTCAAATCTTCAAGTTCTTGATATAAGTGACAACCAGTTAGAGGGTACTCTTTCTCCAAATTTGCACCTTTCCTTTCCCAATCTTAATTCATTTATTGTTGGATGGAACCAGTTTACTGGCAACTTCCCATCTTCAATATCCAACCTCACAGAATTGATACAATTTGATATATCTTTCAATAATTTTAGAGGGCCAATTCCTCCTACTTGGGGACACTCAAAAAATCTTCGCTACTTTGGTATTAATAACAATACTTTGATTGGAACCGGAGGAGCTCAGGATTTGGATTTCCTTTCCTCTTTAACCAATTGCACACAATTGTCATATTTGATTCTGCGAGGAAATAATCTAGGCGGTGTATTGCCTGATCTCATAGGCAACTTCTCTGGCAGTCTCTCTGTGATTGAGATTTCCAATAATCAAATATCTGGAAGGCTACCTGAAGCAATTGGAAACTTATTTGGCTTACGTGACCTTCTTATGCATGAGAATTCCCTTGAGAGAACCATTCCTGATTCAATTGGAAAGCTTAAGAACCTCGGAAGAGTATCATTCGCCAAGAACAATTTCTCAGGTAATATTCCTATTGCTGTAGGAAATCTTTCTAAATTATCAGAAGTTTACATGGGCTTCAATAGATTTAGTGGAAGACTTCCATTTACCTTGAGATATTGTACAAGTATGCAGCTATTCAATGTTCGAGAAAACAATTTGAGTGGTAACATCCCTACTCAAACCTTTGGTTATCAAGAAGGTTTAGTATATCTTGACTTGTCCACCAACTCTTTTACTGGTCCCATTCCTTCAGATTTTGGTAGCTTGAAGCATCTTTCCTTAGTATTTCTATATGAAAACAAGTTATCTGGTGTCATTCCCATGGAACTTTTTTCTTGTTCTGCATTAACTGAGCTTTATCTATACACAAACTCTTTCCATGGAAGTATTCCTTCATTGTTTGGCTCTCTAAAATCCCTTGAAATCTTAGACCTTTCTAGCAACTTCTTCTCAGGAACAATCCCGCGTGAACTTGAGAACCTCACATTGTTGAATGGTTTGAACCTTTCTGATAACCAACTCTATGGCCAGGTCCCACTAGGAGGAGTCTTTAGTAACATCTCAGAAATATCACTCTTTAAAAACAAGGATCTTTGTGGTGGGATACCTCAACTGAATCTCCCTCCTTGTCCTAAGTTGCCCTCAAACAAACACAAGAGATCACTTAAAAAGAAAATTGTTCTCATCACTATAATTAGTGGACTTTTGATCTCTTCCATAATTTGTTTTGGTATCTATTATTTCACCAAGAAGCCCAAGAAGTTATCTTCTTCACCATCTCTAGAACATAGATACTTGAGGGTTTCTTATGGAGAGCTACATCAAGCTACGGATGGATTTTCTTCGTCCAATTTAGTTGGCACAGGAAGCTCTGGCTCTGTATATAGAGGAACCCTTGTCCATTTTGAGAGACCTGTTGCTGTGAAGGTGTTGAATCTTCAAACGCGGGGGGCATTGAAGAGTTTCATGTCCGAATGCAAAGCTCTAGGAAAGATCAAGCATAGAAACCTTCTCAACATATTGACCTGTTGTTCCAGTGTTGATTACAAAGGTGATGATTTCAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACTTTGTTGCACAACAATGAAGAGATCGAATCCGGAAATCTAAGTCTCGACCTTATGCAAAGGACAAATGTTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGAAACTGAGGAAGCTGTAGTTCATTGTGATGTTAAGCCAAGTAATGTTCTACTTGATGATGACATTGTTGCCCACTTAGGAGACTTTGGGATAGCCAGACTTCTTCATGGACCAGCCACAACAAGCTATAATAGTGGTAATCAGGCTAGTTCCTCTGTAATTAAGGGAACCATTGGATATCTTCCACCAGAGTATGGTGAAGGTGGGTCAGTATCACCACAAGGAGACATCTATAGCTATGGAATTCTTCTTTTGGAAATACTAACCGGAAAGAGACCAACGGATGCCATGTTTGGTGAAGGTCTAAGCCTACACAAGTTCTGCAAAATGGCAATTCCAGAAGGAATCACTGAGATTGTTGATTCAAGATTGTTGCTGACTCCGTTTGATGAAGGAGAAAGAAGGATCACACAACAGCAAACCATTGAGGAGTGTTTAGTGTCTTTTGCTAGGATTGGAGTTGCATGTTCTCAAGAATCTCCCACTCAAAGGATGAGCATTAAGGATGTCATAATGGAGCTTCATGCAATTAAACACAAACTGCTTAATAGATAG 3057 0.3935 MAVQVPLSSEIDKLALLALKGKLTNGDPDALPSWNESLHFCEWEGVTCSRRHMRVSALQLQNQDFGGTLGPSLGNLTFLVELNLTDLNLYGDIPREVGHLKRLQILSLMQNNIFGEIPRELGRLKRLQFLELKKNNFHGEIPMELANCSSLNKIDLSSNNLTGEVPSWFGSMMQLSFLELAFNNLVGNIPPTLGNLSSLNTLSLANNFLEGPIIQALGRLTNLVFISLTYNNLSGQVPSSFYNLSNLQVLDISDNQLEGTLSPNLHLSFPNLNSFIVGWNQFTGNFPSSISNLTELIQFDISFNNFRGPIPPTWGHSKNLRYFGINNNTLIGTGGAQDLDFLSSLTNCTQLSYLILRGNNLGGVLPDLIGNFSGSLSVIEISNNQISGRLPEAIGNLFGLRDLLMHENSLERTIPDSIGKLKNLGRVSFAKNNFSGNIPIAVGNLSKLSEVYMGFNRFSGRLPFTLRYCTSMQLFNVRENNLSGNIPTQTFGYQEGLVYLDLSTNSFTGPIPSDFGSLKHLSLVFLYENKLSGVIPMELFSCSALTELYLYTNSFHGSIPSLFGSLKSLEILDLSSNFFSGTIPRELENLTLLNGLNLSDNQLYGQVPLGGVFSNISEISLFKNKDLCGGIPQLNLPPCPKLPSNKHKRSLKKKIVLITIISGLLISSIICFGIYYFTKKPKKLSSSPSLEHRYLRVSYGELHQATDGFSSSNLVGTGSSGSVYRGTLVHFERPVAVKVLNLQTRGALKSFMSECKALGKIKHRNLLNILTCCSSVDYKGDDFKAIVFEFMPNGSLETLLHNNEEIESGNLSLDLMQRTNVALDVAFALDYLHNETEEAVVHCDVKPSNVLLDDDIVAHLGDFGIARLLHGPATTSYNSGNQASSSVIKGTIGYLPPEYGEGGSVSPQGDIYSYGILLLEILTGKRPTDAMFGEGLSLHKFCKMAIPEGITEIVDSRLLLTPFDEGERRITQQQTIEECLVSFARIGVACSQESPTQRMSIKDVIMELHAIKHKLLNR 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212014g00005 1018 SUPERFAMILY Protein kinase-like (PK-like) 682 1008 IPR011009 -
Stsc212014g00005 1018 PANTHER OS04G0122200 PROTEIN 218 1016 - -
Stsc212014g00005 1018 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 48 267 - -
Stsc212014g00005 1018 Gene3D Ribonuclease Inhibitor 268 336 IPR032675 -
Stsc212014g00005 1018 Gene3D Ribonuclease Inhibitor 166 267 IPR032675 -
Stsc212014g00005 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 680 790 - -
Stsc212014g00005 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 791 1018 - -
Stsc212014g00005 1018 Pfam Protein kinase domain 711 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00005 1018 Gene3D Transferase(Phosphotransferase) domain 1 791 1017 - -
Stsc212014g00005 1018 SMART LRR_typ_2 220 243 IPR003591 -
Stsc212014g00005 1018 SMART LRR_typ_2 100 124 IPR003591 -
Stsc212014g00005 1018 SMART LRR_typ_2 518 542 IPR003591 -
Stsc212014g00005 1018 SMART LRR_typ_2 566 589 IPR003591 -
Stsc212014g00005 1018 SMART LRR_typ_2 244 268 IPR003591 -
Stsc212014g00005 1018 SMART LRR_typ_2 397 421 IPR003591 -
Stsc212014g00005 1018 SMART LRR_typ_2 590 615 IPR003591 -
Stsc212014g00005 1018 Pfam Leucine rich repeat N-terminal domain 12 49 IPR013210 -
Stsc212014g00005 1018 ProSiteProfiles Protein kinase domain profile. 709 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00005 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Stsc212014g00005 1018 SUPERFAMILY RNI-like 58 392 - -
Stsc212014g00005 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 645 - -
Stsc212014g00005 1018 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Stsc212014g00005 1018 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Stsc212014g00005 1018 Gene3D Ribonuclease Inhibitor 9 165 IPR032675 -
Stsc212014g00005 1018 PRINTS Leucine-rich repeat signature 151 164 - -
Stsc212014g00005 1018 PRINTS Leucine-rich repeat signature 244 257 - -
Stsc212014g00005 1018 SUPERFAMILY L domain-like 374 629 - -
Stsc212014g00005 1018 Gene3D Phosphorylase Kinase; domain 1 674 790 - -
Stsc212014g00005 1018 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515
Stsc212014g00005 1018 SMART serkin_6 709 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00005 1018 Gene3D Ribonuclease Inhibitor 337 648 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212014g00005 Stsc-Chr212014 22315 25589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212014g00005 8 1014 Receptor kinase-like Gene Family AT3G47570 42.380 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc212014g00005 Pkinase 5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212014g00005 - - ahf:112766919 1254.97