Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212014g00003 ATGTTATCTACTACTTCTCTAGCTTTACAATATGGCTATGTGAAGATTTCCTATGAAGGGCTGCATCAAGCAACAAATGGGTTTTCTTCATCCAATCTAGTTGGTACAGGAAGTTTTGCCTCTGTGTATAGAGGAACCCTTGTCAATTTTGAGAGACCTGTTGCTATCAAAGTGCTGAACCTTAAAACGCGCGGGGCATCTAAGAGTTTCATGGCCGAATGCAAAGCTCTAGGAAAAATCAAACACAGAAACCTTGTCAGCATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGGAATGATTTCAAGGCCATAGTGTTTGAGTTCATGTCTAATGGGAGTTTAGAAACCTTGTTGCACAACACTATTGAAGATAGCGAGTCCACAAATCCAAGTCTCAACCTTATTCAAAGAATAAATATTGCTCTCGATGTAGCTTTTGCATTGGATTATCTTCACAATGATTCATGGGAAGGTGTAGTTCATTGTGATATAAAGCCAAGCAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTTGGATTATCTAGGGTCATTCATGGTGCCGCAAGCCAAATTAGCAGTGATCAAGCTAGTTCCTCAGCAATTAAGGGAACCATTGGATATATTCCACCGGAGTATGGAGCAGGTGGATCAGTGTCAGCAGAAGGAGACATGTATAGCTATGGTGTTCTTCTTTTGGAGATGCTCACTGAAAAGAAGCCAACTGATCACTTGTTTGGTGAAGGTCTAAGCCTACACATGTTCTGTAACATGGCAATTCCAGATGGAATCACAAAAATTGTTGATTCACGATTGCTGATTCCCTTTGATGAAGGGCAAAGAAGGATCACACAACAGCAAAATATGGAAGACACCATTCGCGAGTGTCTCGTGTCATTTGGTAGGATTGGAGTTGCATGCTCTCAAGAGTTTCCTAATCAACGAATGAGTATAAAAGATGTCATAAATGAGTTGCATGCAATTAAGCAAAAGCTATCATGCTAA 1017 0.4041 MLSTTSLALQYGYVKISYEGLHQATNGFSSSNLVGTGSFASVYRGTLVNFERPVAIKVLNLKTRGASKSFMAECKALGKIKHRNLVSILTCCSSVDYKGNDFKAIVFEFMSNGSLETLLHNTIEDSESTNPSLNLIQRINIALDVAFALDYLHNDSWEGVVHCDIKPSNVLLDDDMVAHLGDFGLSRVIHGAASQISSDQASSSAIKGTIGYIPPEYGAGGSVSAEGDMYSYGVLLLEMLTEKKPTDHLFGEGLSLHMFCNMAIPDGITKIVDSRLLIPFDEGQRRITQQQNMEDTIRECLVSFGRIGVACSQEFPNQRMSIKDVINELHAIKQKLSC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212014g00003 338 FunFam LRR receptor-like serine/threonine-protein kinase EFR 2 109 - -
Stsc212014g00003 338 Gene3D Phosphorylase Kinase; domain 1 9 109 - -
Stsc212014g00003 338 Gene3D Transferase(Phosphotransferase) domain 1 110 337 - -
Stsc212014g00003 338 SUPERFAMILY Protein kinase-like (PK-like) 9 332 IPR011009 -
Stsc212014g00003 338 PIRSF ILK 282 337 - -
Stsc212014g00003 338 PIRSF ILK 15 261 - -
Stsc212014g00003 338 ProSiteProfiles Protein kinase domain profile. 28 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00003 338 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 110 338 - -
Stsc212014g00003 338 Pfam Protein kinase domain 30 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00003 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Stsc212014g00003 338 SMART serkin_6 28 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00003 338 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 14 334 - -
Stsc212014g00003 338 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212014g00003 Stsc-Chr212014 15952 17122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212014g00003 5 335 Receptor kinase-like Gene Family AT3G47570 46.988 4.16e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc212014g00003 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212014g00003 - - ahf:112702394 560.066