Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212014g00002 ATGTCATTCATTGGAGACAAAGATCTCTGTGGTGGAATACCTCACCTGAATCACCCTCCATGCCCTGAGTTACTGCTTTCAAGTAAACATAAGAGGTCTATTAAAGTTGCTATGAGTTTCTTTCACGTAAACACCTCAGCTGAATCTTCCTCCATGCCCACAGATGAAACTATCAGTGGGGGTTTGGAGTTTTTTAGTGGGGTTTTGGCATTTGTGGGTGGGGTTTTGGCATCTTTAGTAATTTTCATCTGCATTTGTTATTTGAGGAAAAAGCCCAAACCTTCATCCTTACCATCACTAGAACATAAGTACTTGAAGGTTTCTTATGGAGAGCTACACCAAGCAACAGACGGATTTTCTTCCTTAAATTTGGTTGGCACAGGAAGCTTTGGTTATGTCTATAAAGGAACTCTTGTCCATTTTGAAAGACCTATTGCTGTGAAGGTGTTGAATCTTCAAACATATGGGGCATCAAAGAGTTTCATAGCTGAATGCAAAGCTCTTGGAAAAGGAAAACTCAGACACCGAAATCTTGTCAATATACTGACTTGTTGTTCAAGTATCGATTATAAAGGTGATGAATTTAAGGCCATAGTATTTGAGTTCATGCCTAATGGGAGTCTAGAAACCTTGCTGCACAACAATGAAGATAGGGACTCCAAAAATCTGAATCTCAACCTTATACAAAGGGTAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGACTCTGAAGAAGCTATAGTTCATTGTGATGTTAAGCCGAGCAATGTTCTTCTTGATGATGACATGGTTGCCCACTTGGGGGATTTTGGGCTTGCTAGGCTTCTTCTTCATGGTTATGGAGGCACTCATAGTTCTAGCTCATATGAAGCCAGTTCATCTGCAATTAAGGGGACTATTGGATATCTTCCACCCGAGTACGGAGCAGGATATCCAGTGTCAGCAGAAGGAGACATTTATAGCTATGGAATTCTTCTTTTAGAGATGATAACTGGAAAGAAGCCAACTGATAGCATGTTCAGTGAAGTTCTATGCCTGCACAAGTTCTGTAAAATGGCAATACTTGAAGGAATCACTGACATTGTTGATTTAAGATTGCTGACTGTATTTGATGAAGGAGAAAAAAGGATCACACGGCAGCAAAATATGGAAGACAACATTTTAGAGTGTCTTGTGTCCTTTGCTAGGATTGGAGTTGCATGTTCTCAAGAGTTTCCTATTTATCGAATGAGCATAAAAGATGTCATAATTGAGTTGCGTGGAATTAAGCAAAAGCTATCCTACTATTAA 1305 0.3931 MSFIGDKDLCGGIPHLNHPPCPELLLSSKHKRSIKVAMSFFHVNTSAESSSMPTDETISGGLEFFSGVLAFVGGVLASLVIFICICYLRKKPKPSSLPSLEHKYLKVSYGELHQATDGFSSLNLVGTGSFGYVYKGTLVHFERPIAVKVLNLQTYGASKSFIAECKALGKGKLRHRNLVNILTCCSSIDYKGDEFKAIVFEFMPNGSLETLLHNNEDRDSKNLNLNLIQRVNIALDVAFALDYLHNDSEEAIVHCDVKPSNVLLDDDMVAHLGDFGLARLLLHGYGGTHSSSSYEASSSAIKGTIGYLPPEYGAGYPVSAEGDIYSYGILLLEMITGKKPTDSMFSEVLCLHKFCKMAILEGITDIVDLRLLTVFDEGEKRITRQQNMEDNILECLVSFARIGVACSQEFPIYRMSIKDVIIELRGIKQKLSYY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212014g00002 434 Gene3D Transferase(Phosphotransferase) domain 1 203 433 - -
Stsc212014g00002 434 SMART serkin_6 119 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00002 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Stsc212014g00002 434 Gene3D Phosphorylase Kinase; domain 1 85 202 - -
Stsc212014g00002 434 ProSiteProfiles Protein kinase domain profile. 119 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00002 434 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Stsc212014g00002 434 Pfam Protein kinase domain 121 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00002 434 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 203 433 - -
Stsc212014g00002 434 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 48 428 - -
Stsc212014g00002 434 SUPERFAMILY Protein kinase-like (PK-like) 92 422 IPR011009 -
Stsc212014g00002 434 FunFam LRR receptor-like serine/threonine-protein kinase EFR 90 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212014g00002 Stsc-Chr212014 10634 12557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212014g00002 1 430 Receptor kinase-like Gene Family AT3G47570 41.798 3.32e-99 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc212014g00002 Pkinase 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212014g00002 - - ahf:112766492 535.413