Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212014g00001 ATGGCTTCACAAACCTTGGCTGTGCATGTACCCTTGAGTTCAGATACCGATAAGATTGCATTGCTTGCCTTGAAGGACAAGCTTACCAATGGCGATCCTCATGCTCTACCATCATGGAATCATTCTCTCCATTTCTGTCAATGGGAGGGCATTACATGCAGTCGCCGTCACAAGAGAGTCTCAGCCTTGCAACTGCAAAGTCAAGACTGGAGTGGCACTCTAGCATCATCCTTGGGAAATCTAACGTTCCTAAGAGTGATCAATCTTACTAGCATCAAATTGCATGGTGAGATTCCAAGAGAAGTTGGTCATTTGAAGAGGCTGCAGATTCTTGACTTGATGCACAATAATCTTCATGGTCAGATTCCTATGGAGATGACAAATTGTTCAAGTCTTGAGGTAATTATATTACACCAAAATAATATAACTGGCAAAGTTCCTTCTTGGTTTGGTTCCATGATGCAACTCACTCGACTAATGCTTGGTGTCAACGGTTTAGTTGGTAGTATCCCAGCTTCTTTGGGAAATGTTTCATCGCTTGAGAAGTTGTCACTTGCAGACAATCATTTGGAAGGAACCATACCTCCAGCTTTGGGTAGGATGTTGAGTTTGAAACTTTTATATTTGGGTGTAAATAATTTGTCCGGTCAAGTCCCTCCTTCACTTTACAACCTTTCAAATATTCAAGATCTTTCACTCACTGAAAATCAATTAGTGGGTGCTCTTCTCTTGAATATACCGACGTCTTTTCCTAATCTTGAGGTTTTTCAGTGTGGAATAAATCGATTCACTGGTACTTTTCCATCTTCGATATCCAATCTTTCTGAACTAGAAACTTTTGACATAGCCGGAAATGATTTTCATGGACCAATTTCTCCAACTTTAGGAAGTTTACCCAAACTGAAGTATTTTGATGTTTCTTTTAATAGATTTGGGAGTGGAAGTGCTCATGATTTGGATTTTCTTTCGTCGTTAGAGAATTGTACTCAATTGCAACAACTAATCATTCAACAAAATTATTTTGGGGGGGTTTTGACAGATCTCATAGGCAACTTATCAACTAATCTGGTTTGGCTTACTATGGGGTCCAATCAAATATCTGGAAGAATACCTGAAGGAATTGGAAAACTAATCAACCTAGAAGCACTTGGTATGGAAAGAAATTCCTTTGAGGGAACAATTCCATATTCAATCGGAAAGCTCACGAATTTGGTAGAGATGGCGTTGGAGGAAAATAAACTCTTTGGCAATATTCCTCTTGTCATTGGTAACCTTACTATGTTGTCTGAACTTGATCTGAGCTTAAACAAGTTTGAAGGATGCATTCCTTTTACACTTGGAAATTGCACCAAGATGGAGAGATTTTATGCTCATGATAACAACTTAAGTGGTAATATACCCATTCAAACATTTGGTTACCAACAAGGTTTGATAGAGCTTTACCTATATTCCAACTCCTTTACAGGCTCCATTCCTTCTGATCTTGGTAACTTGAACCATCTTTCCATCTTGCATTTACAAGAAAACAAGTTAATTGGTGAGATTCCAATAGGACTTAGTGCTTGCTCTGCTTTAACAGAACTCTTATTAGAAAGAAACTCGTTCAATGGAAGTATACCTTCATTCTTAGGGTCTCTACTATCCCTTGAAATCTTAGACCTTTCTAATAACAACTTCTCAAGCACAATCCCGCATGAACTTGTGAATCTCACGTTCTTGAACACTTTGAATTTATCTTTCAACAATCTCTCTGGTGAAGTCCCAGTTATAGGGGTATTTAAAAACATCACAGCAATATCACTCACCGGAAACAAACATCTTTGCAGTGGGATACCTCAATTGCATCTTTCTCCATGCCCTGCATTGCCCTTGCAGAAGAAAAGCAGAAGATCTATTAGAAGGAGAGCAAATCTCTTTTGTAGCTTTGGATCTGTGTATAGAGGAACCCTTGTCCATTTTGAGAGACCTGTTGCTGTCAAAGTGTTAAACCTTCAAACACGAGGAGGATCGAAGAGTTTCATGGTCGAGTGCAAAGCTCTAGGCAGAATCAAGCACAGAAACCTTCTCAGCATAATGACTTGTTGTTCAAGTGTTGATTTTAAAGGGGATGATTTCAAGGCCATAGTGTTCGAGTTCATGTCTAACAAGAGTCTAGAAATCTTGTTGCACAGCACAATTGAAGATAGCGAGTCCACAAATTTGAGTTTCAGCCTTGTGCAAAGAATAAATATTGCTCTCGATATAGCTTTTGCATTGGATTATCTTCACAATGATTTAGAAGAAGCTGTAGTTCATTGTGATATTAAGCCAAGCAATGTCCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTCGGATTAGCTAGACTCATTCATGGTACCGCAAGTCATTCTGGCAGTAATCAAGCTTGTTCCTCATCTGCAATTAAGGGGACCATTGGATATATTCCACCAGAGTATGGAGGAGGTGGCACAGTGTCAAGAGAAGGAGACATGTATAGCTATAGAATACTTCTTTTGGAGATGCTCACTGCAAAGAGGCCAACTGATACCATGTTTGGTGAAGGTCTAAACCTTCGCAGTTTCTGTAACATGGCAACGCCAGAAAGAATCATTGAGATTGTTGATTCAAGATTGCTCATTCCAATTGATGAACAAGATCAGGGAAGAAGGGTCATCACAAGGCAGCAAAATATGGAAGACACCATTCGAGAGTGTCTTGTGTTGTTTGCTAGGATTGGAATTGCATGTTCTGAAGAATCTCCCTCTCAAAGAATGGGCATCAAAGATGCGATAATGGAGTTACATGCAATTAAACACAAACTGCTTTCATAA 2838 0.3943 MASQTLAVHVPLSSDTDKIALLALKDKLTNGDPHALPSWNHSLHFCQWEGITCSRRHKRVSALQLQSQDWSGTLASSLGNLTFLRVINLTSIKLHGEIPREVGHLKRLQILDLMHNNLHGQIPMEMTNCSSLEVIILHQNNITGKVPSWFGSMMQLTRLMLGVNGLVGSIPASLGNVSSLEKLSLADNHLEGTIPPALGRMLSLKLLYLGVNNLSGQVPPSLYNLSNIQDLSLTENQLVGALLLNIPTSFPNLEVFQCGINRFTGTFPSSISNLSELETFDIAGNDFHGPISPTLGSLPKLKYFDVSFNRFGSGSAHDLDFLSSLENCTQLQQLIIQQNYFGGVLTDLIGNLSTNLVWLTMGSNQISGRIPEGIGKLINLEALGMERNSFEGTIPYSIGKLTNLVEMALEENKLFGNIPLVIGNLTMLSELDLSLNKFEGCIPFTLGNCTKMERFYAHDNNLSGNIPIQTFGYQQGLIELYLYSNSFTGSIPSDLGNLNHLSILHLQENKLIGEIPIGLSACSALTELLLERNSFNGSIPSFLGSLLSLEILDLSNNNFSSTIPHELVNLTFLNTLNLSFNNLSGEVPVIGVFKNITAISLTGNKHLCSGIPQLHLSPCPALPLQKKSRRSIRRRANLFCSFGSVYRGTLVHFERPVAVKVLNLQTRGGSKSFMVECKALGRIKHRNLLSIMTCCSSVDFKGDDFKAIVFEFMSNKSLEILLHSTIEDSESTNLSFSLVQRINIALDIAFALDYLHNDLEEAVVHCDIKPSNVLLDDDMVAHLGDFGLARLIHGTASHSGSNQACSSSAIKGTIGYIPPEYGGGGTVSREGDMYSYRILLLEMLTAKRPTDTMFGEGLNLRSFCNMATPERIIEIVDSRLLIPIDEQDQGRRVITRQQNMEDTIRECLVLFARIGIACSEESPSQRMGIKDAIMELHAIKHKLLS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212014g00001 945 Gene3D Ribonuclease Inhibitor 317 623 IPR032675 -
Stsc212014g00001 945 FunFam LRR receptor-like serine/threonine-protein kinase EFR 320 625 - -
Stsc212014g00001 945 ProSiteProfiles Protein kinase domain profile. 631 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00001 945 Pfam Protein kinase domain 641 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00001 945 SUPERFAMILY L domain-like 15 311 - -
Stsc212014g00001 945 SMART serkin_6 641 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212014g00001 945 Gene3D Phosphorylase Kinase; domain 1 640 713 - -
Stsc212014g00001 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Stsc212014g00001 945 Gene3D Ribonuclease Inhibitor 12 251 IPR032675 -
Stsc212014g00001 945 Pfam Leucine rich repeat N-terminal domain 15 54 IPR013210 -
Stsc212014g00001 945 Gene3D Transferase(Phosphotransferase) domain 1 714 944 - -
Stsc212014g00001 945 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 54 319 - -
Stsc212014g00001 945 SUPERFAMILY Protein kinase-like (PK-like) 641 936 IPR011009 -
Stsc212014g00001 945 ProSiteProfiles Leucine-rich repeat profile. 548 571 IPR001611 GO:0005515
Stsc212014g00001 945 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 713 945 - -
Stsc212014g00001 945 PANTHER UNNAMED PRODUCT 14 516 - -
Stsc212014g00001 945 SMART LRR_typ_2 177 201 IPR003591 -
Stsc212014g00001 945 SMART LRR_typ_2 498 522 IPR003591 -
Stsc212014g00001 945 SMART LRR_typ_2 105 129 IPR003591 -
Stsc212014g00001 945 SMART LRR_typ_2 425 449 IPR003591 -
Stsc212014g00001 945 SMART LRR_typ_2 546 570 IPR003591 -
Stsc212014g00001 945 SUPERFAMILY L domain-like 353 609 - -
Stsc212014g00001 945 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Stsc212014g00001 945 Gene3D Ribonuclease Inhibitor 252 316 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212014g00001 Stsc-Chr212014 972 4431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212014g00001 12 944 Receptor kinase-like Gene Family AT3G47570 40.100 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc212014g00001 Pkinase 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212014g00001 - - ahf:112766919 1252.27