Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212009g00006 ATGGAATTGAAGAACACTGGGAATTTGGTTTTGCTTGGGAATAATGATAGTGTAGTGATGTGGCAGAGCTTCGATTACCCAATCGATACATTGCTGCCATTGCAGGAATTCAATGAGGGAATGAAACTTGTTAGTGAACTTGATTCTAACAAATTTAGCTATGTTCTTGAGATTGGTTCATCCGGTGATGTTACTCTTTCGGCCGTCTTAAAAACTCTGCAGCCAATGCCATATTGGTCCATGCAGAGTAACAGCCGAAAAATCGTCAATAAAGGTAGCAATGAAGTGGCTTCAGTAACCATTGTTGAAAATTCTTGGAGATTCTATGACAAGAAGAAATCATTGTTGTGGGAATTTGTTTTTGAAGATAATCAGGCTGTGAATGGTACTTGGACTGCAGTGCTGGGAAGTGATGGCATTATCACATTCTCCAATCTCCAAAGTCAAGGATTGGGTGGCATCTCACCAACAAGAATTCCGGAATATTCTTGCAGCTCACCGGAGCCTTGTGATCGCTACAACCTATGCACTAGTGATAGAAAGTGCAGCTGTCTTTCTATTCTAAGCTCTAGGCCTAGTTGCAAGCCTGGTTTTGCCTCTCCTTGTAACTTGAAAGGTGCAATTGAGCTAGTTAAAGTCGAGGATGGACTAAACTACTTTGAGCTTGGGTTCCTTCAACCCTTTTCGAGAACTGATCTGATTGGTTGCAAGAATTCCTGCAGCGAAAATTGTTCATGCCTTGCTATGTTCTTCCAAGAAAGTTCCAGAAACTGTTTTCTGTTGGATCGGATCGGAAGCTTTGAGAAAACTAATAAAGATTCCGGTTTTGTCTCTTACATTAAGGTCTCTAGCATTGTTGACACTGACAAAGGTGATAGTGGAAATGGTAATAAGCAAACCATAATTGTTGTGATAATTGTGATTTTAACATTGCTTGTTATTTCTGGTATGATCTTTCTTGGTCTAAGATACTACAAGAAAAGTGAAACCCTGGCTGAGCCTTCGTCCCAAGAGAATTCAGAAGGTGACAATTTCTTGGAGAACTTAACCGGCATGCCAATTTGCTATACCTACAATGATCTTGAAATTGCAACTAATAACTTCTCTGAGAAGCTTGGGCAAGGGTGTTTCGGCTCGGTTTACAAAGGAGTCCTACAAAATGGAACAGAACTAGCTGTTAAGAAGTTGGAAGGAATTGGCCAGGGGAAGAAAGAGTTCAGAGCTGAAGTTAGCATTATTGGTAGCATTCATCATCACCATTTGGTTCGGCTTAAAGGATTTTGCGCCGAAGGAACTCACCGGCTTCTTGCTTATGAGTACATGGCTAATGGCTCATTGGATAAGTGGATATTCAATCAAAACAAAGCAGAATTTTCATTGGATTGGGATACAAGGTTCAATGTAGCGCTTGGAACTGCGAAAGGACTCGCATACCTCCACGAAGATTGTGACTCGAAGATTGTTCATTGTGACATCAAACCAGAAAATGTGCTTCTAGATGAGAAATTCAATGCCAAAGTTTCGGATTTCGGTCTAGCCAAGCTCATGACACGTGAACAAAGCCATGTTTTCACAACACTAAGGGGAACTCAAGGGTATCTCGCCCCGGAGTGGATAACAAACTATGCCATATCGGAGAAAAGTGATGTATACAGCTATGGTATGGTTTTGCTAGAGATAATCTGCGGTCGGAAAAACTATGATCCAGTCAAAAGCTCAGAGAAATCTTATTTCCCATATTTTACATTCAAGATGATGGAAGAAGGGAAACTAAGAGATATTATTGATTCAGATTTAAAACCATATGAAGATGATGAGAGGTTACAAATTGCAATCAAAGTTGCATTGTGGTGCATCCAAGAAGACATGAATATAAGGCCTTCAATGACCAAAGTTGTGCAAATGCTTGAAGGTCTTTGCACTGTTCCTAAGCCACCACCAAGATTTTCTGCATTGAGATCCAACATTATTCACTCAATTCCTTTTTCTAAGTCAGCTAGTGAAGCTGGAACTTCTTCATCACCACCATCAGATACTAATGCTGAAGCTTTTCTCCATGGCCTTCAGCTTTCAGGGCCAAGATAA 2085 0.4058 MELKNTGNLVLLGNNDSVVMWQSFDYPIDTLLPLQEFNEGMKLVSELDSNKFSYVLEIGSSGDVTLSAVLKTLQPMPYWSMQSNSRKIVNKGSNEVASVTIVENSWRFYDKKKSLLWEFVFEDNQAVNGTWTAVLGSDGIITFSNLQSQGLGGISPTRIPEYSCSSPEPCDRYNLCTSDRKCSCLSILSSRPSCKPGFASPCNLKGAIELVKVEDGLNYFELGFLQPFSRTDLIGCKNSCSENCSCLAMFFQESSRNCFLLDRIGSFEKTNKDSGFVSYIKVSSIVDTDKGDSGNGNKQTIIVVIIVILTLLVISGMIFLGLRYYKKSETLAEPSSQENSEGDNFLENLTGMPICYTYNDLEIATNNFSEKLGQGCFGSVYKGVLQNGTELAVKKLEGIGQGKKEFRAEVSIIGSIHHHHLVRLKGFCAEGTHRLLAYEYMANGSLDKWIFNQNKAEFSLDWDTRFNVALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDEKFNAKVSDFGLAKLMTREQSHVFTTLRGTQGYLAPEWITNYAISEKSDVYSYGMVLLEIICGRKNYDPVKSSEKSYFPYFTFKMMEEGKLRDIIDSDLKPYEDDERLQIAIKVALWCIQEDMNIRPSMTKVVQMLEGLCTVPKPPPRFSALRSNIIHSIPFSKSASEAGTSSSPPSDTNAEAFLHGLQLSGPR 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212009g00006 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Stsc212009g00006 694 SUPERFAMILY Protein kinase-like (PK-like) 347 637 IPR011009 -
Stsc212009g00006 694 MobiDBLite consensus disorder prediction 665 694 - -
Stsc212009g00006 694 FunFam serine/threonine-protein kinase PBS1-like 334 440 - -
Stsc212009g00006 694 CDD STKc_IRAK 372 639 - -
Stsc212009g00006 694 SMART serkin_6 366 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212009g00006 694 Pfam Protein kinase domain 369 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212009g00006 694 ProSiteProfiles Protein kinase domain profile. 366 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc212009g00006 694 Pfam D-mannose binding lectin 2 37 IPR001480 -
Stsc212009g00006 694 MobiDBLite consensus disorder prediction 665 680 - -
Stsc212009g00006 694 Gene3D Phosphorylase Kinase; domain 1 329 440 - -
Stsc212009g00006 694 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 46 IPR036426 -
Stsc212009g00006 694 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 647 - -
Stsc212009g00006 694 FunFam S-receptor-like kinase 5 441 645 - -
Stsc212009g00006 694 Gene3D Transferase(Phosphotransferase) domain 1 441 644 - -
Stsc212009g00006 694 ProSitePatterns Protein kinases ATP-binding region signature. 372 395 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212009g00006 Stsc-Chr212009 19502 21664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212009g00006 302 646 Receptor kinase-like Gene Family AT5G20050 43.802 1.03e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc212009g00006 Pkinase 1.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212009g00006 - - gmx:100787500 957.592