Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212008g00001 ATGATGTCAAGGTCGTATACGAATCTCTTAGATTTGGCTTCTGGGAATTTCCCAGCAATGGGGAATTCGTTTAAAGAACGGCGGCGGATGCCAAGGGTTATGAGTGTTCCTGGGATTGTCACAGAAGTGGATGATGATCAGGCAGTTAGTGTTTCTTCTGATAACCCATCAACTATTTCTATGGATCGAATGATCATTGTAGCAAATCAGCTACCTTTAAAAGCAAAGCGGCGAGAGGACAACCAAGGTTGGACTTTCAGTTGGAACGAGGATTCCTTGCTTTTACAACTCAAGGATGGACTTCCAGAGGAGATGGAGGTTCTTTATGTTGGATCTTTGCGTGTTGATATTGATCCAGCTGAGCAGGATGATGTGTCGCAGTATTTATTGGATAAATTCAAATGTGTCCCTACTTTTCTACCATCTGATGTTTTGGCAAAGTTTTATGACGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCGTTTTCAACTGCTAACAGCCACCGTTTTGATCGATCTTTGTGGGAAGCCTATGTGCTGGCAAATAAGCTATTTTTTCAAAAGGTAGTTGAAATAATAAACCCAGAAGATGATTTTATTTGGGTTCATGATTATCATTTGATGGTGCTGCCCACCTTTATAAGAAGGCGCTTTAACAGGGTTAAACTAGGATTTTTCCTGCATAGTCCCTTTCCTTCATCAGAGATATATAGGACTCTTCCTGTCAGGGAGGAGATACTTAAAGCATTACTCAACTCTGATATCATTGGATTCCACACGTTTGACTATGCTCGTCATTTCCTTTCTTGTTGTAGTCGTATGCTGGGTTTGGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGTAGGACTATCAGTATTAAGATTATGCCAGTAGGGATTCACATGGGTCGAATTGAAACCGTTATGAAGATGGCAGATGAGGAGTGCAAGGCAAGGGAGCTCNNNNNNNNNNAGCAATTTGAAGGGAAAACCATCTTGCTCGGTGTTGATGATATGGACATTTTTAAAGGTATTAATTTGAAGATTTTGGCTATGGAGCAAATGCTCAAACAACACCCTAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATTGTAAATCCTGCAAGGGGCAGAGGTATACATCTAGACGAGATACGTTCTGAAATAGAAGAAAGCTGTAGCAGGATTAACAGAGTGTATGGACGACCTGGTTATGAACCGATTATTTTTATTGATAGATCTGTTTCAATTGCTGAAAAAGTTGCCTATTACAGCCTTGCTGAGTGTGTTATTGTCACAGCTGTGAGGGATGGGATGAATCTAACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGGTAATGATTCATGTTCTGATGTTAGAAGCCCAAAGAAGAGTATGCTAGTAATATCAGAATTTATTGGGTGTTCTCCATCACTCAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAGGCCACTGCAGAAGCAATGAATGAGGCTATCTCAATGAGTGATGGAGAGAAGCAGTTGCGGCATGAAAAGCACTACCGGTATGTTAGCACACATGATGTGGCATACTGGTCACGTAGTTTCTTGCAGGATATGGAGAGGGCATGCACTGACCTTCTAAGAAAACGATGTTGGGGAATTGGTCTTAGTTTTGGATTTAGAGTTGTAGCACTTGACCCTAATTTTCGTAAGCTCTCAATTGATGCTATGGTCTCATCTTACAAGAGGGCAAGGAGTAGGGCCATTTTGTTGGACTATGATGGTACAGTGATGCCACAGAATTCCATTAATAAAAGTCCAAGCAATGAGGTTCTCTCTCTTTTGGACACACTCTGTGCTGATCCCAGAAATGTAGTTTTCATTGTTAGTGGAAGGGGGAGGAAAAGCTTAAGTGATTGGTTCTTACCCTGCAAAAATCTTGGAATTGCCGCGGAACATGGTTACTTTTTGAGATGGTCGCAAAGTGCAGATTGGGAAATATGTGGTAAGAACATGGACTTTGGATGGATGCAGATTGCTGAACCTGTGATGAAACTCTACACAGAGGCAACTGATGGTTCCAACATTGAAACAAAGGAAAGTGCTTTGGTCTGGCAATACCGGGATGCAGATCTTGGTTTTGGATCTTCTCAAGCTAAGGAAATGTTAGATCACCTAGAAAGTGTTCTAGCCAATGAGCCGGTTGCTGTGAAGAGTGGCCAATTCATTGTTGAAGTAAAACCCCAGGATGTAAGCAAAGGCTTAGTTGCCGAAAGGATATTTTCATCAATGGCAGAGAATGGAAGACAGGCTGATTTTGTGTTGTGTGTTGGTGATGATAGATCAGATGAAGACATGTTTGAAATAATTAGTAGTTCAATCTCAAGAAATATTCTTTCAGCCAATTCTTCTGTATTTGCCTGCACAGTTGGACAAAAACCAAGCAAAGCTAAGTATTATTTGGATGATACTACTGAAGTAATAAGCATGCTTGAATCTTTGGCAGAAGAATCAGATTCTTCCCCCGACTTAGAAGAAATTGGAGATTCTTTCCAAAGGCAAGTGAGATTATGA 2598 0.4088 MMSRSYTNLLDLASGNFPAMGNSFKERRRMPRVMSVPGIVTEVDDDQAVSVSSDNPSTISMDRMIIVANQLPLKAKRREDNQGWTFSWNEDSLLLQLKDGLPEEMEVLYVGSLRVDIDPAEQDDVSQYLLDKFKCVPTFLPSDVLAKFYDGFCKRQLWPLFHYMLPFSTANSHRFDRSLWEAYVLANKLFFQKVVEIINPEDDFIWVHDYHLMVLPTFIRRRFNRVKLGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIETVMKMADEECKARELXXXXQFEGKTILLGVDDMDIFKGINLKILAMEQMLKQHPKWQGRAVLVQIVNPARGRGIHLDEIRSEIEESCSRINRVYGRPGYEPIIFIDRSVSIAEKVAYYSLAECVIVTAVRDGMNLTPYEYIACRQGISGNDSCSDVRSPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMSDGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSSYKRARSRAILLDYDGTVMPQNSINKSPSNEVLSLLDTLCADPRNVVFIVSGRGRKSLSDWFLPCKNLGIAAEHGYFLRWSQSADWEICGKNMDFGWMQIAEPVMKLYTEATDGSNIETKESALVWQYRDADLGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQDVSKGLVAERIFSSMAENGRQADFVLCVGDDRSDEDMFEIISSSISRNILSANSSVFACTVGQKPSKAKYYLDDTTEVISMLESLAEESDSSPDLEEIGDSFQRQVRL 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212008g00001 865 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 594 711 - -
Stsc212008g00001 865 FunFam Trehalose-6-phosphate synthase 2 678 757 - -
Stsc212008g00001 865 NCBIfam trehalose-phosphatase 592 843 IPR003337 GO:0003824|GO:0005992
Stsc212008g00001 865 Pfam Trehalose-phosphatase 598 832 IPR003337 GO:0003824|GO:0005992
Stsc212008g00001 865 NCBIfam HAD-IIB family hydrolase 597 799 IPR006379 -
Stsc212008g00001 865 CDD HAD_TPP 596 835 - -
Stsc212008g00001 865 Gene3D Glycogen Phosphorylase B; 55 317 - -
Stsc212008g00001 865 Gene3D - 594 696 IPR023214 -
Stsc212008g00001 865 Gene3D - 723 854 IPR023214 -
Stsc212008g00001 865 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 315 - -
Stsc212008g00001 865 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 552 - -
Stsc212008g00001 865 CDD GT20_TPS 63 548 IPR001830 GO:0003824|GO:0005992
Stsc212008g00001 865 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 724 854 - -
Stsc212008g00001 865 FunFam Alpha,alpha-trehalose-phosphate synthase 317 532 - -
Stsc212008g00001 865 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 844 IPR001830 GO:0003824|GO:0005992
Stsc212008g00001 865 Pfam Glycosyltransferase family 20 63 548 IPR001830 GO:0003824|GO:0005992
Stsc212008g00001 865 Gene3D Glycogen Phosphorylase B; 318 532 - -
Stsc212008g00001 865 SUPERFAMILY HAD-like 595 843 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212008g00001 Stsc-Chr212008 3583 8067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212008g00001 1 849 Trehalose Biosynthesis Gene Families AT1G06410 77.150 0.0 1373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212008g00001 K16055 - gmx:100800847 1553.11