Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212001g00003 ATGGCAGAAACTGAAGATAAGAAACATGATGATCCTCCTCCACCACAACAACCACCAACAACAGAGGAATCAGCCGCTGTCGTCGCCGTTGACACGAACAACAACATAGGTCAGCAAGCAAATAAATCCAACAATAACAACATGATGAGAAGGTTCATAGGTGTGAGGCAAAGGCCATCAGGGAGATGGGTGGCAGAGATTAAAGATTCATCTCAACATGTAAGACTATGGCTTGGTACATATGATTCACCTGAAGAAGCTGCTAGGGCTTATGATGAAGCTGCTAGAGCACTTCGTGGGGAGAATGCAAGAACCAACTTTGCACCACCCTCTTCAAAACCACCAACTCCTCCAACATCAGGAAATAATAACAACAATAAGCATGGATTAAGCTTTGCTTCATTGAAGGCAAAGTTGAGCAAGAACTTGCAAAGCATCATGGCAAGGGCTAATCACAACAACAAGTCTTCATCATCAAAGAGTAGGGTTAGTGACCATTTCACCTTTGCTAGCATATTCAACCGCCATAATAGGAACAACAATCATCAACATCCTCCTCCTCCAATGTTAGATCATGTCAAGAACATTGATCACAAAGTGGTGCAACCTAGCATCATAGTACCACCACATGTGGATCATCAAAATCAACATGATCCTAATAACAATAACAATAATAATTGGGAAAATTCAAGTGTGTCTACTGATTGTAGCACTGAGTGGATTATGAATCATGGGTTGTTCCAAAAACATAGGTTATTGTTGGATTCATCATCCTCAGCAGGATCCGATAATGATGGTGAGTTTGGTGTTTGTGATCAAGGTGTTTTGGATCAACTAATGGGTTGGGTTGATAGCACTCAAATTAGTAGTGAAAATAATGATGAGGGTTTATTATTATCATCATCAAGGAGCAAGAGATTCAAGGTAGCTTCTTCTGTTCTTGTGCCACCAAGTTTCTCTTCTGCTTCTTCTTCTCCTTATTATTATGATTGTGGTTCTCCATACACTGCTTGTGGATCTCCATATTATGGCTATGGTGGTTATGGATCTCCTAATTACTTTGGCTCTCCCTATAATAATAATTTTAATGGTGGCAAGCCATGA 1104 0.4031 MAETEDKKHDDPPPPQQPPTTEESAAVVAVDTNNNIGQQANKSNNNNMMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDSPEEAARAYDEAARALRGENARTNFAPPSSKPPTPPTSGNNNNNKHGLSFASLKAKLSKNLQSIMARANHNNKSSSSKSRVSDHFTFASIFNRHNRNNNHQHPPPPMLDHVKNIDHKVVQPSIIVPPHVDHQNQHDPNNNNNNNWENSSVSTDCSTEWIMNHGLFQKHRLLLDSSSSAGSDNDGEFGVCDQGVLDQLMGWVDSTQISSENNDEGLLLSSSRSKRFKVASSVLVPPSFSSASSSPYYYDCGSPYTACGSPYYGYGGYGSPNYFGSPYNNNFNGGKP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212001g00003 367 MobiDBLite consensus disorder prediction 214 230 - -
Stsc212001g00003 367 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Stsc212001g00003 367 MobiDBLite consensus disorder prediction 102 129 - -
Stsc212001g00003 367 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Stsc212001g00003 367 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Stsc212001g00003 367 MobiDBLite consensus disorder prediction 209 230 - -
Stsc212001g00003 367 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 219 - -
Stsc212001g00003 367 FunFam ethylene-responsive transcription factor RAP2-11 50 109 - -
Stsc212001g00003 367 MobiDBLite consensus disorder prediction 1 24 - -
Stsc212001g00003 367 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Stsc212001g00003 367 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Stsc212001g00003 367 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Stsc212001g00003 367 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Stsc212001g00003 367 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212001g00003 Stsc-Chr212001 27347 28888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212001g00003 38 108 AP2-EREBP Transcription Factor Family AT5G19790 61.972 5.89e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc212001g00003 AP2 3.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212001g00003 K09286 - adu:127746683 425.631