Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc212001g00002 ATGATGGTGGAAGGTGAGGTTTTGAATGAGGAGCTTTCAACAGAAGAATGGTTGTTGAATGCAGAGAAGCTTGTTCCTGAGGCAATTGATAAGGCTAAAGAGGTTAAATTGTTCCCTGGAAGATGGAAGATGATTGTTTCCAAGCTAGAACAGGTCCCTTCGCGGCTGTCGGATTTGTCGAGCCACCCGTGTTTCGGGAAGAATGCACTTTGCAAGGAGCAGCTGCAGGCAGTGACAAGGACTCTGAAGGAATCAATTGAATTGGCTGAGATTTGTGTGAAGGACAAGTTTGAAGGTAAGCTTAAGATGCAGAGTGATCTTGATTCTTTAGCTGCAAAATTGGATTTGAATTTGAGGGATTGTGGCCTACTCATCAAGACCGGTGTCCTCGGCGAGGCCACTCTGCCTTTGCCGGATGCTGCTGCTGCGAACAGCAGCATCCGGGAGTTGCTTGCTCGCCTCCAGATCGGTCATCTGGAGGCGAAGCATAAGGCTTTGGATAATCTTGTTGAAGCAATGAGGGAAGATGAAAAGAAAGTTTTGGCGGTTATGGGGAGAAGCAACATTGCTGCTTTGGTTCAGTTGCTAACTGCCACTTCTCACAGGATAAGAGAGAAGGCAGTTACAGTTATATGCTCGCTGGCAGAATCCGGTAGCTGCGAGAATTGGTTAGTCTCTGAAGGCGTTCTGCCACCTCTTATAAGGCTGGTTGAGTCTGGTAGTTTTGTGGGAAAAGAGAAAGCTGCAATTTCTCTTCAGAGGCTCTCAATGTCAGCCGAAACCGCCCGTGAAATCGTTGGACACGGCGGGGTTAGGCCGTTGGTTGAGCTTTGTCAAACCGGTGATTCGGTGTCACAATCCGCGGCTGCTTGTACACTGAAGAATATTTCAGTTGTTCCGGAGGTTAGACAAGCTTTGGCTGAAGAAGGGACCGTTAAAGTAATAATCAATTTGCTCACCTGCGGAATTCTGTTGGGATCCAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACTGCAAGCAATGAGAATCTTCGGAGGAATGTCATAGCCGAAGGCGGCGTTATGAGCCTTCTAGCCTATCTTGATGGTCCACTGCCTCAAGAATCCGCCGTCGGCGCGTTGAGGAACTTGGTAGGATCTGTCCCGGAGGACAAACTCCTTTCGCTCGGCTTCCTTCCGAGATTGTGTCACGTGCTGAAATCCGGTTCCCCGGGAGCTCAGCAGGTGGCCGCAGCCACAATCTGCCGAATCTCAAGCACATTAGAGTTGAAAAAATTGGTTGGTGAAGTTGGATGCATACCTCACCTTGTAAAGATGCTGGAGGCGAAATCAAGCAGCGCTAGGGAGGCGGCCGCGCAGGCGATCGCGAGCCTAATCAGCGTGTCGCGGAATCAAAGAGAAGTGAAGAAGGATGAGAAGAGTGTTCCAAGCTTGGTTCAGTTGCTTGATCCAAGTCCACAGAACAGTGCAAAGAAATATGCAGTTTCATGCTTGGGATCACTGTCTTCATGCAAGAAATGCAGGAAGCTTATGATCTCTTATGGGGCAATTGGGTATCTGAAGAAACTCACTGAGATGGATATTCCAGGTGCTAAGAAACTTCATGAGAGACTGGAAAAAGGGGATTTTAGAAGCTTGTTTAGCAAGAAATAG 1656 0.4837 MMVEGEVLNEELSTEEWLLNAEKLVPEAIDKAKEVKLFPGRWKMIVSKLEQVPSRLSDLSSHPCFGKNALCKEQLQAVTRTLKESIELAEICVKDKFEGKLKMQSDLDSLAAKLDLNLRDCGLLIKTGVLGEATLPLPDAAAANSSIRELLARLQIGHLEAKHKALDNLVEAMREDEKKVLAVMGRSNIAALVQLLTATSHRIREKAVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSFVGKEKAAISLQRLSMSAETAREIVGHGGVRPLVELCQTGDSVSQSAAACTLKNISVVPEVRQALAEEGTVKVIINLLTCGILLGSKEYAAECLQNLTASNENLRRNVIAEGGVMSLLAYLDGPLPQESAVGALRNLVGSVPEDKLLSLGFLPRLCHVLKSGSPGAQQVAAATICRISSTLELKKLVGEVGCIPHLVKMLEAKSSSAREAAAQAIASLISVSRNQREVKKDEKSVPSLVQLLDPSPQNSAKKYAVSCLGSLSSCKKCRKLMISYGAIGYLKKLTEMDIPGAKKLHERLEKGDFRSLFSKK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc212001g00002 551 Coils Coil 156 179 - -
Stsc212001g00002 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 549 - -
Stsc212001g00002 551 Gene3D - 427 540 IPR011989 -
Stsc212001g00002 551 Pfam Armadillo/beta-catenin-like repeat 262 297 IPR000225 GO:0005515
Stsc212001g00002 551 Pfam Armadillo/beta-catenin-like repeat 423 459 IPR000225 GO:0005515
Stsc212001g00002 551 Gene3D - 139 325 IPR011989 -
Stsc212001g00002 551 Gene3D - 326 426 IPR011989 -
Stsc212001g00002 551 SMART arm_5 421 461 IPR000225 GO:0005515
Stsc212001g00002 551 SMART arm_5 463 504 IPR000225 GO:0005515
Stsc212001g00002 551 SMART arm_5 381 420 IPR000225 GO:0005515
Stsc212001g00002 551 SMART arm_5 176 216 IPR000225 GO:0005515
Stsc212001g00002 551 SMART arm_5 299 340 IPR000225 GO:0005515
Stsc212001g00002 551 SMART arm_5 341 380 IPR000225 GO:0005515
Stsc212001g00002 551 SMART arm_5 258 298 IPR000225 GO:0005515
Stsc212001g00002 551 SUPERFAMILY ARM repeat 146 528 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc212001g00002 Stsc-Chr212001 18549 21912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc212001g00002 301 527 U-box Gene Family AT2G23140 29.310 8.64e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc212001g00002 - - gmx:100781453 836.254