Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211g00001 ATGGCTGCCGCAAAACCTCAGAGGACTCCACAGGAAGTGGAGGACATAATCATCCGCAAAATCTTCCTCGTCTCGATCACCGATTCCGCCGCAATCAACGCCGATTCCAGAATCGTCTATCTCGAGCTCACGGCGGCGGAGATTCTCAGCGAAGGCAAGGACCTCCGCCTCTCGCGGGATTTGATGGAGCGAGTCCTCATTGATCGACTCTCCGGCGACTTTCCCGGCGTCGGAGAATCCCCGTTCCAGTACCTAACAGGTTGCTACCACCGCGCGCATGAGGAGGCCAAGAAAATCGCCAACATGAAGGACAAAACCCTCAGGTCGGAGATGGAGGCGGTGGTGAAGCAAGCCAAGAAGCTCTGCGTCTCATACTGCAGGATTCACCTCGGAAATCCGGAGCTGTTTCCGAACCGGAATCAAGGTTCCGGTTCGGGAACAGCGTCGCCGCTGCTGCCGCTGATCTTCGCTGAGGTTGGCGGTGGCATCGACGCGTTCGGCGGTAGCAGCGGCAGTGGAGGGCCGAAGAGTCCGCCGGGGTTTCTGGAGGAGTTCTTTAGGGAGTCGGATTTTGACAGCCTGGACCCAATCTTGAAAGGGCTGTATGAGGAGCTGAGAGGAAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGATTCTCTGAGGGCTTTGTTGTTCTTGGTGAGATTCCCGGTTGGTGCGAAGTCACTCGTGAGCCACGAGTGGTGGATTCCTAAAGGGGTTTATATGAATGGCCGTGCCATTGAGATGACCAGCATTTTGGGTCCCTTCTTTCACATTAGTGCTCTTCCTGATCAAACCTTTTTCAGGAGCCAGCCTGACGTTGGGCAACAGTGCTTTTCTGATGCATCAACTCGACGACCAGCAGATTTATTATCTTCCTTCTCCACTATCAAAACTGTCATGAATAATTTGTATGATGGCCTATATGAAGTTCTCTTTATTCTCCTTAAAAGTAAAGATACTCGTGATAGTGTACTTGAGTATCTTGCAGAGGTGACCAATATAAATGCATCCAGGGCTCATATACAGGTTGATCCTATAACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCATCTCTGTGAGCCATTTTTGGATGCAAATTTAACCAAAAGGAATAAAATTGATCCAAAGTATGTACACCACTCGAACCGTCTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCGGAAGAAGTTACTGAATGGCTTAACAGCAATAAACGGGCTAATGGAAACAATCAAAATAATGATGGTCAGCAGCGCTTGGAGCAATCTCAAGAAGCAAGTAGTTCTGGTAGTAATGCTGGTGAGCTTTCAAATGAAAATTCTGGACATGGTGAAAAGACGGAATACCATTTCATTTGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGATTTCAAACACTTAGTTCAGGATATTTCTAGATGTGAAGATGCTCTTTCAACACTCAAAACCATGCAAGAGCAGTCTCCCACTCCCCAATTGCAATTGGATATAACTAGACTTGAGAAAGAATTGGAATCATACTCACAGGAAAAGCTTTGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAGAATGCACTATCCTTCTACCGTTTGATGATTGTTTGGTTGGTTAGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCGAATTGCCCAATGGAATTTGCCACTATGCCGGAGCATTTTGTAGAAGATGCCATGGAACTTCTTATATTTGCTTCCCGGATTCCCAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTTATGGCCAGTCCTGAATACATCAAAAATCCATATTTAAGAGCAAAGATGGTTGAAGTCTTGAACTGCTGGATGCCCCGTAGGAGTGGTTCATCTGCCACAGCTACTTTATTTGAAGGTCACCAGCTGTCTCTAGAGTATCTCGTGAGGAATCTTCTAAAACTCTATGTTGACATTGAGTTCACCGGGTCTCACACACAGTTCTATGACAAATTTAACATCCGCCATAATATAGCCGAACTCCTTGAATACCTATGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAGGAAGAGGAAAAGGGTGTTTATCTGAATTTCTTAAACTTTCTGATTAATGATAGCATTTATCTTCTTGATGAAAAGAGGCAGGAGAGGACACGGTTATTCCATTCGCAAGAAAACATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTTGCATTTACGTCAGAGCAGATTACTGCTCCGTTCCTACTTCCAGAGATGGTTGAAAGAGTGGCTAGTATGCTCAATTACTTTCTGCTGCAACTAGTGGGTCCCCAAAGAAGATCACTTAGTCTGAAAGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTTAAGCAGATTGTGCACGTATATGTCCACCTCGCTAGAGGTGATTCAAATTCCATCTTCCCAGCTGCCATTTCCAAGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCAGAGGTTCTTCATAGAATAGGTGAGGATGGGAGAATCATACAAGAATTCATTCAACTCGGTGCTAAGGCAAAAGTTGCAGCTTCAGAGGCCATGGATACTGAAGCTACCTTGGGAGATATCCCAGATGAATTCCTTGATCCAATTCAATACACTTTAATGAAGGATCCTGTCATCTTACCTTCATCAAAGACCGTAGTCGATCGGCCTGTCATACAGCGGCACCTTCTTAGTGATAGCACGGACCCATTCAACCGATCCCATCTTACCTCGGACATGCTGATTCCTGATACTGAACTAAAAGCAAGAATAGAGGAGTTTGTTAAGTCTCAGGAAATGAAGAAACGTGGTGAAGGTTTAAGCATACAGAGCACCAAGGACACGATTCAGACCACAAATGGGGAAATGTTGATTGACTAG 3036 0.4486 MAAAKPQRTPQEVEDIIIRKIFLVSITDSAAINADSRIVYLELTAAEILSEGKDLRLSRDLMERVLIDRLSGDFPGVGESPFQYLTGCYHRAHEEAKKIANMKDKTLRSEMEAVVKQAKKLCVSYCRIHLGNPELFPNRNQGSGSGTASPLLPLIFAEVGGGIDAFGGSSGSGGPKSPPGFLEEFFRESDFDSLDPILKGLYEELRGSVMKVSALGNFQDSLRALLFLVRFPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFRSQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLYEVLFILLKSKDTRDSVLEYLAEVTNINASRAHIQVDPITCASSGMFVNLSAVMLHLCEPFLDANLTKRNKIDPKYVHHSNRLKLSGLTALHASSEEVTEWLNSNKRANGNNQNNDGQQRLEQSQEASSSGSNAGELSNENSGHGEKTEYHFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKTMQEQSPTPQLQLDITRLEKELESYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVSLVGGFKMPLPSNCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEYIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDEKRQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRRSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDSNSIFPAAISKDGRSYNDQLFSAAAEVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDTEATLGDIPDEFLDPIQYTLMKDPVILPSSKTVVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPDTELKARIEEFVKSQEMKKRGEGLSIQSTKDTIQTTNGEMLID 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211g00001 1011 FunFam Ubiquitin conjugation factor e4 a 912 990 - -
Stsc211g00001 1011 Pfam Ubiquitin elongating factor core 262 749 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Stsc211g00001 1011 Pfam Ubiquitin elongating factor core 749 896 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Stsc211g00001 1011 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 912 991 IPR013083 -
Stsc211g00001 1011 SUPERFAMILY RING/U-box 905 985 - -
Stsc211g00001 1011 MobiDBLite consensus disorder prediction 422 460 - -
Stsc211g00001 1011 Coils Coil 518 545 - -
Stsc211g00001 1011 CDD RING-Ubox_UBE4A 915 983 - -
Stsc211g00001 1011 SMART Ubox_2 916 979 IPR003613 GO:0004842|GO:0016567
Stsc211g00001 1011 PANTHER UBIQUITINATION FACTOR E4 5 749 IPR045132 GO:0000151|GO:0030433|GO:0034450
Stsc211g00001 1011 ProSiteProfiles U-box domain profile. 912 986 IPR003613 GO:0004842|GO:0016567
Stsc211g00001 1011 MobiDBLite consensus disorder prediction 422 458 - -
Stsc211g00001 1011 Pfam U-box domain 913 984 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211g00001 Stsc-Chr211 876 7280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211g00001 1 1011 U-box Gene Family AT5G15400 73.880 0.0 1565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211g00001 K10597 - gmx:100806175 1721.06