Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211998g00003 ATGTCCATGTCCATGCAGATGGAACAGAAGCAGCACCACCATCATCCTCATTCACAAACCCTCATTCCACCTCCTCCTTCTTCTTCTTCTCTTCATCGTTATTCCATACACCCTCCATCCCCCTCACCATCACCATCACCATCTCCTTCTTCTCTCTTGACCAAGTCAACGCTACCACCACCATCACCTTCTAAGTCTCCGGTAGACTTCAGCCCACCACTCATAGCAATGGTTGTTGTCATCGCCACCGCCTTCCTCCTCGTCACATACTCCCGTCTCATCGCCCGCCACCTCACTCCTCCCCTCCACCGTCTCATCCGCCGATTCCGCCGTCGCCGCCGCACCCATTCCTTCCTCCCCTCCTCCTCCGGCGACCTTGACTCCCTCCCTTACTACTACGACTCCCCATTCGACCCACATCTCCCACCCTCCTCCCTCTCCCCTTACGGCCTCGACGACTCCGTCATCAAAACCATCCCTTTCTCCCTCTACGCCGCCTTATACGCCGGCGAACTCAACAGCACCTCCTCTCGCCGTTCATCTTCACGCCGTGACTGCGCCGTTTGCCTCTTCGAATTCGAAGACGATGATTACGTCCGAACCTTGCCTCTCTGCTCCCACACCTTCCACGTTGATTGCATCGACGCTTGGCTTCGTTCCCACGCAAACTGCCCTCTCTGCCGCGCCGGAGTTCTCTCCGCCGCGTCGCCGTTTACTCCCATGTTCGCAGCCAGGATCCGACCAAGTCTCGATGACGACGCGATCTTCCACAGGATAACCGCGGAGAACACTCTGCCTCCGCCGGAGGATCATCGTCATTCTACGACGGCGGTTTCGGCGGCGCCGGAGATCACCGTGGAAGTTCCCGAGGAAGGGTTCAATGGGAGAGACTTTCTCTTGAAACGTTCTTATTCGTTTGGGTTTGAAAGGAGCTTGGCGTCGGAGAGGATGCTGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGTACCGGAGAGGAGGGAGCAGCAGCAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGGTCTATTGGGAAGCCGAGAGTGTTCTCTTTCCGATACTACAGAGGGATGAAGTCACCGTTTTTCCGGCGAAGAGGGTTTTTTCCGTTGTCGGAGTCAAGCATGAGGTACGCCGGCGGCGGGAGCTCGTCGCGGCGGAGTAAATCCATCGCCAGCCCCATGTTCTTAAGATCATCCGTATTGACCTCCTCGGCTGCTGCCGGCGCGGCGGGGTTTTCGTCGAGCCGGCTGAGATGCGGCGATCCCGAGGCGCTGCTTTCGCCGGAGAGGTTCAACAGAAGATGA 1326 0.5807 MSMSMQMEQKQHHHHPHSQTLIPPPPSSSSLHRYSIHPPSPSPSPSPSPSSLLTKSTLPPPSPSKSPVDFSPPLIAMVVVIATAFLLVTYSRLIARHLTPPLHRLIRRFRRRRRTHSFLPSSSGDLDSLPYYYDSPFDPHLPPSSLSPYGLDDSVIKTIPFSLYAALYAGELNSTSSRRSSSRRDCAVCLFEFEDDDYVRTLPLCSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDAIFHRITAENTLPPPEDHRHSTTAVSAAPEITVEVPEEGFNGRDFLLKRSYSFGFERSLASERMLVMEPATASPWRYRRGGSSSSFWSKRPSPFGSIGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVLTSSAAAGAAGFSSSRLRCGDPEALLSPERFNRR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211998g00003 441 Pfam Ring finger domain 185 228 IPR001841 -
Stsc211998g00003 441 PANTHER RING-H2 FINGER PROTEIN ATL16 57 251 IPR044600 GO:0016567|GO:0016740
Stsc211998g00003 441 MobiDBLite consensus disorder prediction 38 67 - -
Stsc211998g00003 441 SUPERFAMILY RING/U-box 185 234 - -
Stsc211998g00003 441 CDD RING-H2_EL5-like 185 228 - -
Stsc211998g00003 441 FunFam RING-H2 finger protein ATL65 144 232 - -
Stsc211998g00003 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 232 IPR013083 -
Stsc211998g00003 441 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Stsc211998g00003 441 MobiDBLite consensus disorder prediction 1 67 - -
Stsc211998g00003 441 SMART ring_2 186 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211998g00003 Stsc-Chr211998 13211 14536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211998g00003 64 441 C3H Transcription Factor Family AT3G18930 51.759 8.20e-100 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211998g00003 - K19041 gmx:100795347 482.641