Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211995g00003 ATGGATTCTGCAAGAAGTTGGCTTCACAAATTTCAGCCACGAGAGAAAGGGAAGAGCGCTAGCAGAAGGAAAGAAGGTGATGGAGAAGATGAGACTAATAATGCTGCTCCTATGGATGATGAAGCTCTTTCAAATGTCACAAAGCAGAAGGTTGCTGCTGCAAAACAGTATATTGAGAACCATTACAAGGAGCAAATGAAGAGCCTTCAGGAAAGGAAAGAGCGTCGAACCATCTTGGAAAAGAAGTTAGCTGATGCTGATGTGTCTGAGGAGGATCAAAACAACCTACTTAAATTTCTAGAGAAAAAAGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACCATGATTGGCAAAGGTGCATTTGGAGAGGTTAGAGTATGTAGAGAAAAGACAACAGGTCATGTATATGCAATGAAAAAGTTAAAGAAAGCTGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCCGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTTCAAGACGATGATCATCTGTATCTTATTATGGAGTACCTACCGGGTGGCGATATGATGACTTTACTTATGAGAAAGGACATCTTGACTGAAGATGAAACCCGTTTTTATATAGGAGAAACCGTTCTGGCTATTGAGTCTATACATAGACACAATTACATACATAGGGATATTAAACCTGATAACTTATTGCTGGATAGATATGGACATGTGAGACTATCAGATTTTGGACTTTGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATCTTTCTGTAGGTCAAAATGCTCAGGGATCTGCACAAAATGATGATCGCACAACTCCAAAACGCACACAACAAGAACAGTTGGAACACTGGCAGCAAAACAGAAGGACACTTGCCTATTCTACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAAAAGGGATACGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTCTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCAGAAGAAGCAAGGTTGTCTCCAGAGGCTAAAGATCTTATTAGTAAGCTTTTGTGTAACGTCGCTCAGAGACTAGGATCAAATGGCGCAGATGAAATAAAGGATCATCCATTTTTTAATGGTGTTGTATGGGACAAGTTGTATCAAATGGAAGCTGCATTTATTCCCGAAGTCAATGATGAGTTAGATACCCAAAATTTTGAAAAGTTTGAAGAGGCAGATAACCATATGCTTCAATCATCATCAAGATCTGGTCCATGGAGAAAGATGCTTTCATCTAAGGACATGAATTTTGTGGGATATACATACAAGAACTTTGAAATTGTCAATGACTATCAAGTTCCTGGAATGGCTGAATTGAAGAAGAAAAGCTCCAGATCAAAGAAGCCATCCATCAAGTCACTCTTTGATGTTGATCCTGAGGGATCAGAGTTTTCTGAGGCTGTAGATGCACCTGCAACAGAGGAATCTCAGACCACGAAGGAATGA 1626 0.3954 MDSARSWLHKFQPREKGKSASRRKEGDGEDETNNAAPMDDEALSNVTKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKAEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDDHLYLIMEYLPGGDMMTLLMRKDILTEDETRFYIGETVLAIESIHRHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADLSVGQNAQGSAQNDDRTTPKRTQQEQLEHWQQNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVAQRLGSNGADEIKDHPFFNGVVWDKLYQMEAAFIPEVNDELDTQNFEKFEEADNHMLQSSSRSGPWRKMLSSKDMNFVGYTYKNFEIVNDYQVPGMAELKKKSSRSKKPSIKSLFDVDPEGSEFSEAVDAPATEESQTTKE 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211995g00003 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc211995g00003 541 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211995g00003 541 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Stsc211995g00003 541 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Stsc211995g00003 541 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211995g00003 541 MobiDBLite consensus disorder prediction 1 31 - -
Stsc211995g00003 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 469 - -
Stsc211995g00003 541 CDD MobB_NDR_LATS-like 54 115 - -
Stsc211995g00003 541 Pfam Protein kinase C terminal domain 437 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc211995g00003 541 CDD STKc_NDR_like 118 483 - -
Stsc211995g00003 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Stsc211995g00003 541 MobiDBLite consensus disorder prediction 281 300 - -
Stsc211995g00003 541 SUPERFAMILY Protein kinase-like (PK-like) 93 464 IPR011009 -
Stsc211995g00003 541 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211995g00003 541 MobiDBLite consensus disorder prediction 500 514 - -
Stsc211995g00003 541 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211995g00003 541 MobiDBLite consensus disorder prediction 498 541 - -
Stsc211995g00003 541 SMART pkinase_C_6 419 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc211995g00003 541 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Stsc211995g00003 541 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Stsc211995g00003 541 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Stsc211995g00003 541 FunFam Non-specific serine/threonine protein kinase 91 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211995g00003 Stsc-Chr211995 7975 12087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211995g00003 1 515 AGC Kinase Gene Family AT2G20470 79.119 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc211995g00003 Pkinase 3.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211995g00003 K08790 - gmx:100805940 936.021