Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211994g00001 ATGGCCACCAAAATGAGTGCTCTTATTATCATGGGGCTTGCCATCTTTAGCCTTGTTTCGGTGTCATCAGCTATTTCCGGAACAGCAACTTACTACACAACTTACACTCCATCTGCATGCTACGGGTACACAGACGAAGGTACGTTGATTGCAGCTGCTCCCGCTGGAATATACAACAACGGAGCTGCATGTGGAAGAATGTATAGGATCACCTGCACAAGTGGGACGAACGCCGGTGTCGCTCATCCCTGCACCGGCGCTAGTGTTACCGTCAAGGTCGTCGATCTTTGCCCCGGCTGCGGCGACGGACAATTTGATCTCTCTCAAGAAGCTTTCTCTCAGATAGCTGACATCAATGAAGGAAGAATTAACATTGATTATACCCAGGTTTAA 393 0.486 MATKMSALIIMGLAIFSLVSVSSAISGTATYYTTYTPSACYGYTDEGTLIAAAPAGIYNNGAACGRMYRITCTSGTNAGVAHPCTGASVTVKVVDLCPGCGDGQFDLSQEAFSQIADINEGRINIDYTQV 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211994g00001 130 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 26 130 IPR007112 -
Stsc211994g00001 130 FunFam Barwin-related endoglucanase 24 129 - -
Stsc211994g00001 130 SUPERFAMILY Barwin-like endoglucanases 14 130 IPR036908 -
Stsc211994g00001 130 Gene3D - 24 130 IPR036908 -
Stsc211994g00001 130 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 3 129 IPR044206 GO:0009627|GO:0048046
Stsc211994g00001 130 SMART dpbb_1 50 127 IPR007112 -
Stsc211994g00001 130 Pfam Lytic transglycolase 53 127 IPR009009 -
Stsc211994g00001 130 CDD DPBB_EG45-like 37 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211994g00001 Stsc-Chr211994 7539 9882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211994g00001 35 121 Expansin Gene Family AT3G60570 33.333 1.72e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211994g00001 - - ahf:112743758 191.43