Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211992g00003 ATGGAGAAAGCTTACAGGGCTTGTGGAAAAGGTGGTTTTAAATCTGGGAAGCTTACAAGTGTAAGTAGTTTGGTTCTTGAAAAAAGAATCAAGCAACCATCTGAAATTCCTAATCCGCAAACGAAGGGCAGTTCCTCAAATTCAACAAGCACAAAAGGAGTTCATTCAGCTGATGCAGCTTGCTGTGTTTCAACCTCCAATGTAAGAGGTAGCACTGGAACATTACCCACTAAGGATGCATCGTCTACTTCTAATGTAGTCAACTCAATTACTTCCGTGTCGGACACTACATCCAAGCCTAAGGCTGAACCTCTTTCCACTGACAGTCAAAAGATCTTTGATTTCTGTGCTGGTATTCCTTATGATGAGTCTTTGGGTAGGTACGTGCCAAGAGACGAGAAGGATCAACTAACTTTGATGTTAATAGCTCGCGTGCAAGAATTGCAGTTTACAATGGAAAGCTGGAACAACTGGACAAAGCAAAAGGTTATGCAGGTTACTGAGAGGCTTGGAAAAGTGCAGGGTGAGCTTAAAGCTCTCAGGAAGGAGAAGCAAGATGCCGACCTATATAAAAAGGATCAGAAACTTTTGGAAGAGAATGCTGTAAAGAGAATCTCTGAGATGGAGAATGCCATGGAGAATACTAAAAAGCAAATTGAGAATGCTACTTCTGCTGCAGTTGAGCTAGAGGCAGAGAATGCTTCGCTAAAGAAGGAATTGGGTGATTCTAAATTGTGGGTCCTAAAGTCGATGACAAGCCATCGACAAGCACTTGAGAGAGAGCAGGCTGTTCTTAAACAGCTTCAATCATGGGAGAGCCAAAATGGTTTGCTTCGAGATGAGCTTGAGCGAGAGAAGCACAGTTTATCTAACCTTCAGCAAGTGCTACACAAGGAGAAAAATCTTCTAGCAAACATCGAGGGTAGACTGGGACAAGAGAGAGCTGCGAAAGAAAAGCTCCTTGCACAGGCAGCATCCATTAGAAATGAAAGACTACATCTCGAAGCACACATCAAATCTGAAGAGGATACCATTAGAAAAAAGGCAGCCAATGATATGCAGAAATACGTGGATGATATTGCAAGGCTTGAGAAAGAGTTGATCGAGTTAAAAATAAAATCCGAGTCTGAACAAATAGCAGCTCTTCGAAGGGGTGTTGATGGTAAAAATGATAAGTTCTCCCGAAGAAGCAAGCATACTCCTTCGGTGAAGGAGAACAAGAAATCTAATGCATCCCAAACAATGATGAGCAATCGAGATAAAATGTCTGCGGGAAGCTTGAGGCGGGAGCAGGAGTGCGTCATGTGCCTATCAGACGAGATGTCAGTGGTTTTTCTGCCGTGTGCGCACCAGGTTGTTTGTCAAGACTGCAATGAGCTCCACGAGAAGCAAGGGATGAAGGATTGCCCTTCGTGTAGGACCCCAATTCAACGGAGGATTCATGCCAGATTCGCCGGACATTCGAGGGTGTAG 1473 0.4386 MEKAYRACGKGGFKSGKLTSVSSLVLEKRIKQPSEIPNPQTKGSSSNSTSTKGVHSADAACCVSTSNVRGSTGTLPTKDASSTSNVVNSITSVSDTTSKPKAEPLSTDSQKIFDFCAGIPYDESLGRYVPRDEKDQLTLMLIARVQELQFTMESWNNWTKQKVMQVTERLGKVQGELKALRKEKQDADLYKKDQKLLEENAVKRISEMENAMENTKKQIENATSAAVELEAENASLKKELGDSKLWVLKSMTSHRQALEREQAVLKQLQSWESQNGLLRDELEREKHSLSNLQQVLHKEKNLLANIEGRLGQERAAKEKLLAQAASIRNERLHLEAHIKSEEDTIRKKAANDMQKYVDDIARLEKELIELKIKSESEQIAALRRGVDGKNDKFSRRSKHTPSVKENKKSNASQTMMSNRDKMSAGSLRREQECVMCLSDEMSVVFLPCAHQVVCQDCNELHEKQGMKDCPSCRTPIQRRIHARFAGHSRV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211992g00003 490 MobiDBLite consensus disorder prediction 388 405 - -
Stsc211992g00003 490 PANTHER OS05G0141500 PROTEIN 2 482 IPR046934 -
Stsc211992g00003 490 Coils Coil 346 380 - -
Stsc211992g00003 490 CDD RING-HC_MIP1-like 428 480 - -
Stsc211992g00003 490 MobiDBLite consensus disorder prediction 406 421 - -
Stsc211992g00003 490 MobiDBLite consensus disorder prediction 68 105 - -
Stsc211992g00003 490 MobiDBLite consensus disorder prediction 29 52 - -
Stsc211992g00003 490 MobiDBLite consensus disorder prediction 388 424 - -
Stsc211992g00003 490 Coils Coil 279 323 - -
Stsc211992g00003 490 MobiDBLite consensus disorder prediction 34 52 - -
Stsc211992g00003 490 Coils Coil 163 239 - -
Stsc211992g00003 490 SUPERFAMILY RING/U-box 427 479 - -
Stsc211992g00003 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 405 483 IPR013083 -
Stsc211992g00003 490 ProSiteProfiles Zinc finger RING-type profile. 433 473 IPR001841 -
Stsc211992g00003 490 Pfam Zinc finger, C3HC4 type (RING finger) 430 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211992g00003 Stsc-Chr211992 12680 15591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211992g00003 433 480 C3H Transcription Factor Family AT1G73950 41.667 8.99e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211992g00003 - - gmx:100793172 658.677