Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211992g00001 ATGACCATTTTACCCCTCTTCCTTTTCTTCTTCTTCCTCCCACCACCATCCTTCTCCCAACCACCACCCTCACCACCACCACCATCATCATCATCATGCCCTCTTAACTTCACCATCCTCTCCACCCTCACCGGCCCCGGAAACACCCCAACCTCTTACTCCTCCTCCACCGGAACCGCCGCCACAAACACCAAGTGCCAGTTCATCCGGCAATCCTTCCGCCTCCTCCAGTCCGACCTCCTCCGCCGCACCGACAACTTCCTGCCACCCCTCTCCGCCTCCCTCTCATGCTGGTCCCTCTTCCAATCCTACATCAACTCCTTCGACCCCACCTTCCATATCCAACTCTCATGCGGATTCTCCAACGCTTCCATTTCACAAGGCTGCACGAACATCACCACAAGGCAACGCTTTGAAGCGTTGGTATCCTCTTCCGTGCTCCAAAATGTGGATTCTAGCTGTAACCAGTCCCTTGAGAATAACTCGCCATGCGCACTCTGCACCACAAGCTTGTCTTCATTACCAGCCTCTGGTAACTCTCTTGGGAACCTCACTGATTGCACTTCTCTGCCTTCCATTTACGCTGCTGCTTTTAGCAACGGTTTTGGACCTTCTGACCCTGGCACTGCAAAGTGTTTGTTCGACCTTGATTTCACACCTCTGGGTGATTCCAACAAAAACAAGAATAAAAAGATTGTTGTTGCTGTTGTTGTAACTGTTGTTTGTGTTTTGGGTTTGGTTTTTCTGGTTTTGGGATTGTGGAAGTTGAATGAAAAATTGTGTGGCAAAAATGTTAGCGTTGCTGAAATGGGTTTGGTTTCTTCTAGTGTTGTTATGGGTGTGGATTATTCTTCTATGGATCAGAGCACTATCACCTTGATAAGGTTCAGTATTGAGGAAATTAAGAAAGCTACTAAGAATTTCTCAAGAGATAACATAATTGGAAGAGGGGGTTATGGCAACGTTTACAAAGGGTTGCTAAATGATGGAACCGAGGTTGCATTGAAGAGGTTCAAGAATTGTTCTGCTGCCGGTGATTCCAGCTTCAAGCATGAGGTTGAGGTTATTGCGAGTGTTAGGCATGTGAACCTTGTTGCATTAAGAGGATATTGCAGTGCCACAACGAATCTAGAAGGGTACCAAAGAATCATTGTTTGTGACCTAATGAAAAATGGTAGCCTTCATGACCATTTATTTATTAGCGGCGGTTCTAATTCTAGGAAGCTAAGTTGGCCAATTAGGAAGAAAATTGCAATGGGAACTGCTAGAGGAATTGCTTATTTGCATTATGGTGTTCAACCCTCCATAATTCATAGAGATATCAAAGCGAGTAACATTCTGTTAGACGAAAAATTCGAGGCTAAGGTGGCCGATTTCGGGTTAGCAAAGTTTAACCCTGAAGGGATGACACATATGAGCACAAGGGTAGCTGGAACAATGGGTTATGTTGCTCCTGAGTATGCTTTGTATGGTCAATTAACAGAGAGGAGTGATGTTTTCAGCTTTGGTGTTGTGCTTCTTGAGCTTCTAAGTGGGAAGAAAGCACTTTCAATTGGGAGTGACGGTCAACCTTCTGCGTTGACCGATTGGGCATGGTCATTGGTTAGAACAAACAAGGCCTTAGATGTGATTGAAGATGGAATGCCAGAGCTTGGATCACCCAAGATTCTTGAGAAGTATGTTGTGATTGGTGTCCTCTGTTCTCATCCTCAATTGTATGCTAGGCCTACTATGGATCAAGTTGTTAAAATGATGGAAACTGAACAAGATGTTGAAGAGAATGAAGAAGAATCGGTCGTGCCGGTTATACCGGACCGGCCGATCCCTCTCGTGGCCAGGAAGATTGATATCGAGAGATCGGTTAGTAGTAGCGGCGGCGGCGGATCCGGTGGACTATCTAGTCCTACAGGGTACCAAGCATTTACAATTGGAAGTGATAAGCATTCTTCTGATGATAAGTCTAAGGAAGAAGAAAGTTCAAGCACCAAATATTTTAGTATTGAAGAATGA 2010 0.4532 MTILPLFLFFFFLPPPSFSQPPPSPPPPSSSSCPLNFTILSTLTGPGNTPTSYSSSTGTAATNTKCQFIRQSFRLLQSDLLRRTDNFLPPLSASLSCWSLFQSYINSFDPTFHIQLSCGFSNASISQGCTNITTRQRFEALVSSSVLQNVDSSCNQSLENNSPCALCTTSLSSLPASGNSLGNLTDCTSLPSIYAAAFSNGFGPSDPGTAKCLFDLDFTPLGDSNKNKNKKIVVAVVVTVVCVLGLVFLVLGLWKLNEKLCGKNVSVAEMGLVSSSVVMGVDYSSMDQSTITLIRFSIEEIKKATKNFSRDNIIGRGGYGNVYKGLLNDGTEVALKRFKNCSAAGDSSFKHEVEVIASVRHVNLVALRGYCSATTNLEGYQRIIVCDLMKNGSLHDHLFISGGSNSRKLSWPIRKKIAMGTARGIAYLHYGVQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALSIGSDGQPSALTDWAWSLVRTNKALDVIEDGMPELGSPKILEKYVVIGVLCSHPQLYARPTMDQVVKMMETEQDVEENEEESVVPVIPDRPIPLVARKIDIERSVSSSGGGGSGGLSSPTGYQAFTIGSDKHSSDDKSKEEESSSTKYFSIEE 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211992g00001 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Stsc211992g00001 669 SMART serkin_6 308 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211992g00001 669 MobiDBLite consensus disorder prediction 646 669 - -
Stsc211992g00001 669 CDD STKc_IRAK 314 586 - -
Stsc211992g00001 669 ProSiteProfiles Protein kinase domain profile. 308 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211992g00001 669 Pfam Protein kinase domain 309 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211992g00001 669 MobiDBLite consensus disorder prediction 619 669 - -
Stsc211992g00001 669 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Stsc211992g00001 669 Pfam SPARK 29 176 IPR043891 -
Stsc211992g00001 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 52 660 - -
Stsc211992g00001 669 SUPERFAMILY Protein kinase-like (PK-like) 283 586 IPR011009 -
Stsc211992g00001 669 MobiDBLite consensus disorder prediction 622 645 - -
Stsc211992g00001 669 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 271 387 - -
Stsc211992g00001 669 Gene3D Phosphorylase Kinase; domain 1 274 387 - -
Stsc211992g00001 669 Gene3D Transferase(Phosphotransferase) domain 1 389 603 - -
Stsc211992g00001 669 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 389 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211992g00001 Stsc-Chr211992 110 2142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211992g00001 30 646 Receptor kinase-like Gene Family AT2G48010 59.295 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc211992g00001 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211992g00001 - - gmx:100800760 801.971