Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211990g00001 ATGTTCCCAAGTTGTTACAAGGCCAAAAGCAAGGAAGAAGAAGAAGAGAGGGTTTCAAAACATTGTTCTTTCCAAAGGCTATGCCTCTCTGATGTGAGCATTACAAGCTCACCTAAGGACATTGAAGATCTTTCAACTTCTTTTGTTGGATCAAAGCTCTACACATTCACCTTGGAGGAGCTAAAAGAAGCAACACATAATTTCTCATGGAGTAACATGCTTGGTGAAGGTGGGTTTGGACCTGTTTACAAAGGCTTTGTTGATGACAACCTTAAACGTGGTTTGAAGGCTCAATCCGTGGCGGTTAAACGCTTAGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGGCAGCTAAGGCATTCACATCTTGTTAAGTTAATTGGATACTGTTGTGAAGAAAAGAACAGGCTTTTGGTTTATGAATACATGCCAAGAGGGAGCTTAGAGAACCAATTATTCAGAAGGTATTCTTGTACCATGCCATGGTCAACAAGGATGAAGATTGCATTAGGTGCTGCTAAGGGCCTTGCATTCCTTCACGAAGCAGATAAACCTGTCATATACAGAGATTTCAAAACTTCAAATATCTTACTTGACTCAGACTACACAGCTAAATTATCAGACTTTGGGCTTGCTAAGGATGGCCCTGAAGGAGAAGAAACACATGTAACAACAACACGCATAATGGGAACTAAGGGCTATGCTGCCCCTGAATATGTCATGGCAGGTCACCTTTCTACCAAGAGCGATGTGTATAGCTACGGAGTGGTTCTGTTGGAACTTCTTACGGGGAAGCGGGTGGTGGATAGGAGCCGGCCGAGTCGAGAACGGAGCCTGGTGGAATGGGCAAGGCCTATGTTGAGGGATCAAAGGAAGCTGCAGCATGTGATGGACCCAAGGTTGGAAGGGCAGTTTCCTATGAAAGGAGCAGTTAAGGTTGCTGCATTGACATATAAATGCTTGAGTCACAACCCCAATCCAAGACCCTCAATGAGTGATGTGGTGAAGACATTGGAGTCACTTCAAGACTTTGATGATGTCTTCATAGAACCATTTGTTTATATTGCAGTTACCGGCGTTCTATCGGCGCACGATCGCGGGATTCTGACAGCTTTGAATACCGGAGCCTCAAGCCTTTCTTTTGTGGGTTCAGGCTTCATCGTGCTCTGCTACGTTCTCTTCAAGGAGCTTCGCAAGTTTTCCTTCAAGCTCGTTTTCTACCTCGCCCTCTCCGATATGCTTTGCAGTTTCTTCAGCATAGTAGGGGATCCATCCAAAGGTTTCTTTTGTTATGGTCAAGGCTATAGCACACATTTCTTTTGCGTGGCGTCTTTCCTGTGGACTACAACAATTGCTTTTACCCTACATCGTACTGTTGTTAGGCACAAAGCTGATGTTGAAGAATTGGAGGCCATGTTTCATCTGTATGTATGGGGTACTTCACTGGTTATGACAGTGATCCGCTCCTTTGGTAATGACCATAGACATTTCGGCACAAGGTGTTTGACTCAAACAGGTCGCACAGGGAAGGCAGTTCATTTTTTAACATTTTACACACCGCTCTGGGGTGCCATTTTATACAATGGGTTCACATACTTCCAAGTAATACGCATGCTGAATAATGCGACCCGGATGGCAGTTGGTATGTCAGACCGTGTTTATGTCCCAGATGCAAGAGATAACATGAAGGCTTTGAATAGATGGGGATACTATCCACTGATTCTAATTGGATCATGGGCATTTGGCACTATTAACCGTATTCATGATTTTATTGAGCCTAGCCATAAGATATTTTGGCTCTCATTTCTTGATGTTGGAATGGCAGCCCTTATGGGCCTCTTCAACTCAATTGCATATGGGCTCAATTCTTCAGTTCGTCGTGCAATTTGTGAAAGAATGGACATGTTCTTACCAGAGAGACTCCGCAGATGGCTGCCAAACAATTTCAAGTACAGGAACCAGCAGCAAGAAAGTGAACTGACCTCGTTAAAAATTGAGGATAAATAA 2031 0.4397 MFPSCYKAKSKEEEEERVSKHCSFQRLCLSDVSITSSPKDIEDLSTSFVGSKLYTFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDDNLKRGLKAQSVAVKRLDLDGLQGHREWLAEIIFLGQLRHSHLVKLIGYCCEEKNRLLVYEYMPRGSLENQLFRRYSCTMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGEETHVTTTRIMGTKGYAAPEYVMAGHLSTKSDVYSYGVVLLELLTGKRVVDRSRPSRERSLVEWARPMLRDQRKLQHVMDPRLEGQFPMKGAVKVAALTYKCLSHNPNPRPSMSDVVKTLESLQDFDDVFIEPFVYIAVTGVLSAHDRGILTALNTGASSLSFVGSGFIVLCYVLFKELRKFSFKLVFYLALSDMLCSFFSIVGDPSKGFFCYGQGYSTHFFCVASFLWTTTIAFTLHRTVVRHKADVEELEAMFHLYVWGTSLVMTVIRSFGNDHRHFGTRCLTQTGRTGKAVHFLTFYTPLWGAILYNGFTYFQVIRMLNNATRMAVGMSDRVYVPDARDNMKALNRWGYYPLILIGSWAFGTINRIHDFIEPSHKIFWLSFLDVGMAALMGLFNSIAYGLNSSVRRAICERMDMFLPERLRRWLPNNFKYRNQQQESELTSLKIEDK 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211990g00001 676 ProSiteProfiles Protein kinase domain profile. 68 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211990g00001 676 FunFam Probable serine/threonine-protein kinase PBL8 151 361 - -
Stsc211990g00001 676 Pfam Slime mold cyclic AMP receptor 387 631 - -
Stsc211990g00001 676 CDD STKc_IRAK 74 349 - -
Stsc211990g00001 676 PRINTS GCR1-cAMP receptor family signature 611 630 IPR022343 -
Stsc211990g00001 676 PRINTS GCR1-cAMP receptor family signature 579 597 IPR022343 -
Stsc211990g00001 676 PRINTS GCR1-cAMP receptor family signature 438 456 IPR022343 -
Stsc211990g00001 676 PRINTS GCR1-cAMP receptor family signature 388 406 IPR022343 -
Stsc211990g00001 676 PRINTS GCR1-cAMP receptor family signature 407 422 IPR022343 -
Stsc211990g00001 676 PANTHER OS01G0588500 PROTEIN-RELATED 26 350 - -
Stsc211990g00001 676 FunFam Serine/threonine-protein kinase BIK1 35 150 - -
Stsc211990g00001 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Stsc211990g00001 676 ProSiteProfiles G-protein coupled receptors family 2 profile 2. 377 631 IPR017981 GO:0004888|GO:0007166|GO:0016020
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 603 620 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 478 493 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 394 408 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 517 529 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 530 553 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 573 594 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 621 637 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 377 392 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 440 453 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 410 432 IPR022340 -
Stsc211990g00001 676 PRINTS Putative plant GPCR, GCR1, signature 455 473 IPR022340 -
Stsc211990g00001 676 Gene3D - 371 652 - -
Stsc211990g00001 676 SUPERFAMILY Protein kinase-like (PK-like) 44 348 IPR011009 -
Stsc211990g00001 676 Gene3D Transferase(Phosphotransferase) domain 1 151 357 - -
Stsc211990g00001 676 Gene3D Phosphorylase Kinase; domain 1 30 150 - -
Stsc211990g00001 676 Pfam Protein tyrosine and serine/threonine kinase 70 346 IPR001245 GO:0004672|GO:0006468
Stsc211990g00001 676 SUPERFAMILY Family A G protein-coupled receptor-like 374 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211990g00001 Stsc-Chr211990 7127 16107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211990g00001 55 346 Glycoside Hydrolase AT3G07070 53.220 7.10e-98 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc211990g00001 PK_Tyr_Ser-Thr 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211990g00001 K22987 - gmx:100805771 606.29