LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211989g00001	ATGGATACTAAATCAGCTGTTGATTTAATGGAATCTTCCTCCGAGGTTCACTTTTCTGGATTCCACATGGATGGTTTTGAGCAAAGAAAGTCAAACACAGAACAACCGACAACATCAGCGGCTGACATGTATAAACAACCATTTGTAATAGGTGTTGCTGGAGGTGCAGCATCAGGCAAGACTGCAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTATTGGTTAATCAGGATTCTTTTTACCATAACTTGACTGAGGAGGAACTTGCTCGTGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCTATTGCTATCTGTTATGGATAAGTTGAAGCGTGGTGAGGCAGTAGATATTCCGAAGTACGACTTCAAGAGTTACAAGAGTGATATGTATCCAAAAAGAAGGGTAAACCCCTCAGATGTTATAATTTTGGAAGGAATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTCGATACAGATGCTGATGTTCGTCTGGCCAGAAGGATTAGGCGAGATACTGGCGAGAAGGGTCGGGATATTGCAGTAGTTCTTGATCAGTATTCAAAATTCGTGAAACCAGCTTTTGATGATTTTATTCTCCCAACAAAGAAGTATGCTGACATCATTATACCGCGTGGGGGAGATAATCATGTAGCTATTGACCTGATTGTACAGCATATCCGCACAAAGCTTGGTCAACATGACCTGTGTAAAATATATTCGAATTTATATGTCATTCAGTCAACTTTTCAGATTAGGGGGATGCATACCCTGATACGTGATGCTCAGATAACAAAGCACGATTTTGTATTTTATTCTGACCGTTTGATCCGTTTGGTTGTTGAACATGGGTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGTGTGGACTTCTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGAAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTCTAATTCACAGAGAAGGTGACAATGGCCAGCAGCTAATATACGAAAAGCTTCCAAACGATATCTCGGATAGGCATGTGTTATTGTTGGATCCTATACTTGGAACAGGTAATTCAGCTGTACAAGCGATCTCTTTACTTATAAGAAAGGGTGTACCGGAGTCCAACATTATATTTCTTAACCTGATATCGGCACCTCAAGGTGTTCATGTGGTCTGCAAAAAGTTTCCTAGAATAAAAATAGTGACATCTGAGATCGAGATTGGTTTGAATAAAGATTATCGTGTCATTCCGGGCATGGGCGAGTTCGGGGACCGGTACTTCGGAACAGATGATGATGAGCAGTTGGTGACTCCTTCACAGTAG	1434	0.4121	MDTKSAVDLMESSSEVHFSGFHMDGFEQRKSNTEQPTTSAADMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELARVQDYNFDHPDAFDTELLLSVMDKLKRGEAVDIPKYDFKSYKSDMYPKRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTGEKGRDIAVVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIEIGLNKDYRVIPGMGEFGDRYFGTDDDEQLVTPSQ	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211989g00001	477	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	42	240	IPR027417	-
	Stsc211989g00001	477	CDD	PRTases_typeI	324	439	IPR000836	-
	Stsc211989g00001	477	CDD	UMPK	49	247	IPR000764	-
	Stsc211989g00001	477	Pfam	Phosphoribulokinase / Uridine kinase family	49	235	IPR006083	GO:0005524\|GO:0016301
	Stsc211989g00001	477	SUPERFAMILY	PRTase-like	250	467	IPR029057	-
	Stsc211989g00001	477	Gene3D	-	251	466	IPR029057	-
	Stsc211989g00001	477	Pfam	Uracil phosphoribosyltransferase	265	466	-	-
	Stsc211989g00001	477	FunFam	Uridine kinase	251	466	-	-
	Stsc211989g00001	477	NCBIfam	uridine kinase	46	247	IPR000764	-
	Stsc211989g00001	477	PANTHER	URIDINE KINASE	37	376	-	-
	Stsc211989g00001	477	PRINTS	Uridine kinase signature	77	88	-	-
	Stsc211989g00001	477	PRINTS	Uridine kinase signature	193	204	-	-
	Stsc211989g00001	477	PRINTS	Uridine kinase signature	47	64	-	-
	Stsc211989g00001	477	PRINTS	Uridine kinase signature	179	189	-	-
	Stsc211989g00001	477	PRINTS	Uridine kinase signature	122	137	-	-
	Stsc211989g00001	477	PRINTS	Uridine kinase signature	215	228	-	-
	Stsc211989g00001	477	FunFam	Uridine kinase	44	250	-	-
	Stsc211989g00001	477	Gene3D	-	43	250	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211989g00001	Stsc-Chr211989	2662	9916	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211989g00001	1	469	PRT Gene Family	AT4G26510	83.864	0.0	817

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211989g00001	K00876		-	gmx:100527893	877.856