Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211983g00007 ATGGAGGCGCAGGTGCAGCAGAAGGGGAAAGGGGTGTGCGTGTCGTTGGAGTACCAATTGGAAGAGCCCAAAGAGGAGTTCAAAGTCACCACCAACTGGGACACCGCCAATGACCAACCCCATCACCAGCTCTACTCCTCAGATTTCGGCCAAATCGACGTGCTTGACCACACTAGGTCCAGTAGGGCCAACACTGCCGTGGAGGGCGGAGAGGAGTCTTACCCCTTGGGTGGGCGGCGCTCCTCTTCTTCGGGTTCTGGCGGGCGGAAGTCAGGCGACAAGAGGCGAACGAAGGCTGAGAAGACTATCAGCCTGCCTGTCCTCAGACAGTACTTCGCCGGAAGCCTCAAAGACGCGGCCAAGAGCATTGGAGTGTGTCCGACGACTCTGAAAAGGATATGCAGGCAGCATGGGATAACAAGGTGGCCTTCCAGGAAAATAAAGAAGGTGGGCCACTCTTTGAAGAAACTTCAGCTTGTCATCGATTCAGTTCAGGGTGCAGAGGGTGCCATACAGATTGGCTCCTTCTATGCCAGCTTTCCCGAGTTGAGCTCCACTGATCTCTCTTCCCGTTCCGAATCATCACCATCCAAGAAAACCCACACTACTACAGCTACTAGTTATCACAATCACAATACCTTCTTGAAATCCCCACCCTCCTCTGCATGCAGCCAGACCTTAGACGTTGTCATGACAGAGAACTCCGAAGCAGCATTGTTGCTCAAAAGAGCTCACAGCGAGGCGGCAGAGTTGCATGCATCCCTCCAATCCCAAGACGATACAAAGCATAATAACTTCATCAGCAGCAGATCCACTACTAAGAGTCATAATCACCCTCAAGACAGAGATAGAGAGAGGGGTGCTTTCAGAGTCAAAGCTACTTTCGGGGACGAGAAGATCCGTTTCAGCTTGCAGCCCAATTGGGGGTTCAGAGATCTACAGCTTGAGATGGCAAGGCGTTTCAACCTCAACGATGCTACCATAAGCAGCAGCAACATCGATCTCAAGTACTTGGATGAAGATGGGGAGTGGGTTCTGTTGGCATGCGATGCAGATCTCGAGGAGTGCAAGGACATACACAGATCATCTCAGAACCGCACCATCCGACTCTCACTAATTCAAGCTTCCCCTCTCAATCATCTTCCACCAAACACTTTTGCCAATGGCACCCCCAGCCCATCCTAG 1185 0.5207 MEAQVQQKGKGVCVSLEYQLEEPKEEFKVTTNWDTANDQPHHQLYSSDFGQIDVLDHTRSSRANTAVEGGEESYPLGGRRSSSSGSGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSTDLSSRSESSPSKKTHTTTATSYHNHNTFLKSPPSSACSQTLDVVMTENSEAALLLKRAHSEAAELHASLQSQDDTKHNNFISSRSTTKSHNHPQDRDRERGAFRVKATFGDEKIRFSLQPNWGFRDLQLEMARRFNLNDATISSSNIDLKYLDEDGEWVLLACDADLEECKDIHRSSQNRTIRLSLIQASPLNHLPPNTFANGTPSPS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211983g00007 394 MobiDBLite consensus disorder prediction 60 100 - -
Stsc211983g00007 394 SUPERFAMILY CAD & PB1 domains 280 377 - -
Stsc211983g00007 394 MobiDBLite consensus disorder prediction 187 219 - -
Stsc211983g00007 394 Pfam PB1 domain 289 372 IPR000270 GO:0005515
Stsc211983g00007 394 CDD PB1_NLP 289 372 IPR034891 -
Stsc211983g00007 394 PANTHER PROTEIN NLP8 28 374 IPR045012 GO:0003700
Stsc211983g00007 394 MobiDBLite consensus disorder prediction 251 274 - -
Stsc211983g00007 394 SMART PB1_new 288 375 IPR000270 GO:0005515
Stsc211983g00007 394 MobiDBLite consensus disorder prediction 251 284 - -
Stsc211983g00007 394 ProSiteProfiles PB1 domain profile. 288 375 IPR000270 GO:0005515
Stsc211983g00007 394 ProSiteProfiles RWP-RK domain profile. 89 170 IPR003035 -
Stsc211983g00007 394 Gene3D - 286 373 - -
Stsc211983g00007 394 Pfam RWP-RK domain 103 150 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211983g00007 Stsc-Chr211983 29710 31012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211983g00007 4 376 NLP Transcription Factor Family AT4G35270 48.522 3.02e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc211983g00007 PB1 3.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211983g00007 - - aip:107633985 659.833