Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211983g00006 ATGAACAACTCCTCTGGTTCTCCCAACACAGATCATGCGTGCGTGGTTACGGTTGGTGTTGATGCTTCGTCGTCTCTTGTCGGGAGGCGCAACCCTAGAAAGAAGATGAGGATAATGGAGGAGGAAGGGGTGAAGAAAGTAAAGGGGAATAAGGGGAAGGGTGGTTACACTTACAAGAAGGCAGACCCGGAGGCCCCAAAGATCACCCGTCCGTGCACGGAGTGCGGCAAGAGGTTCTGGTCTTGGAAGGCTCTCTTCGGCCACATGCGATGCCACCCAGAGCGGCAGTGGCGAGGGATCAATCCTCCCACCAGCACCCTCATCATGAGACCACCTCAAGAAGACAGCCTGGAAGACCACGAGGTTGCGGCGTGTCTGCTGTTGCTGGCGAGTGGGAAGGGGAAGGGGAAGGATGATTACGAGGTGGTGACGATGGAGTGTGGCCATGATTCACTTGGAGGAGGCCATAAGTGTAGCATATGCCTCAAGGTGTTCTCCACTGGCCAGGCTCTCGGCGGCCACAAGAGGTGTCACTGGGAGAACACTACTGCACCCTCCCCCATTGACCTCAATTTGCCTCCTCTTCTTGATCAACACCACCATTCCTCTTCTTCTTCTTCTTCTTCAACCTTCACTTTGGATTTGAGGTTGGGTCTTTAA 660 0.5424 MNNSSGSPNTDHACVVTVGVDASSSLVGRRNPRKKMRIMEEEGVKKVKGNKGKGGYTYKKADPEAPKITRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPTSTLIMRPPQEDSLEDHEVAACLLLLASGKGKGKDDYEVVTMECGHDSLGGGHKCSICLKVFSTGQALGGHKRCHWENTTAPSPIDLNLPPLLDQHHHSSSSSSSSTFTLDLRLGL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211983g00006 219 Gene3D Classic Zinc Finger 70 178 - -
Stsc211983g00006 219 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 156 219 - -
Stsc211983g00006 219 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Stsc211983g00006 219 MobiDBLite consensus disorder prediction 197 219 - -
Stsc211983g00006 219 Pfam C2H2-type zinc finger 71 94 - -
Stsc211983g00006 219 Pfam C2H2-type zinc finger 156 180 - -
Stsc211983g00006 219 MobiDBLite consensus disorder prediction 195 219 - -
Stsc211983g00006 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Stsc211983g00006 219 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Stsc211983g00006 219 SUPERFAMILY beta-beta-alpha zinc fingers 71 178 IPR036236 -
Stsc211983g00006 219 SMART c2h2final6 70 92 IPR013087 -
Stsc211983g00006 219 SMART c2h2final6 156 178 IPR013087 -
Stsc211983g00006 219 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 178 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211983g00006 Stsc-Chr211983 17840 18499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211983g00006 56 219 C2H2 Transcription Factor Family AT4G35280 43.363 1.40e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc211983g00006 zf-C2H2_6 2.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211983g00006 - - adu:107496069 193.356