Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211975g00002 ATGGCCAGAGTGATGATGACGTGGTTCAGGTTCTTCTTGTTCTTGATTATTCTGCTCAACTCGTTGAACCCATCACATGGTGGCGAAGAAACTGAAAGTCAAGAAGACCGTGAGCTTCTCTTATCGTTCAAAGCTTCAATCCATGACGATCCACTTCACTCTCTCAGTAACTGGCTCCCAACCACTTCTTTATGCAACTGGAACGGCATCACTTGCAACATGAACAACAACAACGCCGGTGTCCGTGTCGGTGTCGTAGTCGTCGTCACCGCCATCTCCCTCTCCGGTAAAAACATCTCCGGCGAGGCATCTTCCTCCGTTCTCCACCTTCAAAACCTCACATCACTTGACCTCTCCAACAACCAGCTTACAAAGCTCCTCCACTTCGATCAACCTCCTCCATTTCTCTCCCCACTCCGTTACCTCAACCTCAGCAACAACAATCTCACCGGTCCTCTCCCTCGCTCCTTGTTCTCCTCCTCCTTCTCTCTCCTCCACACTCTCGACCTCTCCAACAACATGTTCTCCGGCGAGATTCCTCCCCAAATTGCCCTCTTCTCAGACCTAACCTACCTTGACATAGGAGGCAACCTTCTCGTCGGACACATTCCGACTTCCGTAACCGAATTGAAGAATTTACAGTACTTCACCCTCGCTTCCAACCAGTTAGTCGGTGAAATTCCGAAAGAGATTCAAGCTATGAAGAATTTGAAGTGGATTTACTTCGGTTACAACAATCTCTCTGGTGAAATTCCAAGCGCCATTGGTGAGTTAGCTTCGTTGAACCACCTCGATCTTGTGTACAACAACCTCACCGGAGCTATTCCTGAATCCCTCGGAAACCTAACCGATCTCGAGTACCTCTTCCTCTATCAGAACAAACTCAACGGCCCGATTCCTCGCTCAATCTTCAACCTCAAGAAGCTTGTGTCTCTTGATCTCAGCGATAACTCTCTCTCCGGCGAGATTCCCGAACTCGTGGTGAATCTTCAGAGGCTTGAGATTCTTCATTTGTTTTCTAACAATTTCTCAGGGAATATTCCCAATGGTTTGGAATCTTTGCCTCGGCTTCAGCTCATCCTCTTCTCCAACAAATTCGAAGGCAGGATCCCGAGAAGCTTGAGCACTTGCAAAACGCTGCGTAGAGTGCGTCTCCAGAATAACAAGCTCTCTGGGAATTTGCCTCAGGAACTCACCAAGCTTACTCAGGTCTACTTCTTGGATATCTCCGGCAACCACTTTTCTGGAAGAATTGATGATAGACAGTGGAGCATGCCGTCTCTTCAAATGCTCAATCTGGCTAACAATTTCTTCGCCCGAGAGATTCCCAACTCGTTCGGGAGCGAGAGCTTGGAGGATTTAGACTTATCACAGAATCGATTTTCCGGTGAAATTCCTCGTGGAATCTTCGAGAATTCGAAGGATTTGGTGCAGTTGAAGCTGGGAAACAACAATCTCTATGGTACTATTCCTGAAGAACTCTGTTCATGCAAGAAGCTTGTGGCGTTAGACCTCAGCCATAACAATCTCAACGGTCAAATTCCGGTGAAGCTTGCTGAGATGCCGGTTTTAGGTGTTCTTGATTTGTCAGAGAACCAATTCTCCGGCGAGATTCCGCAGAATTTGGGGAAAGTGGAGTCTCTTGTTCAGGTTAACGTATCACACAACCGTTTCCATGGAAGCTTACCTTCCACCGGAGCGTTCCTCGCAATCAACGCTAGTGCAGTTGCAGGGAACGATCTTTGTGACGGCGAAAGTGAAGCCTCTAACGGTTTGCCACCATGCAAGGGTTCAAGGAACCAGACATGGCTGTTCTTGGTTCTATGTTTTCTCTTTGGATTAGTTGCGATTGCGGTTGCATCTTTTCTGGTAGTTTTGGTGAGAAGAAAGAAGAACCTGGAGATGAGAAGAGTGGAGAATAACGAAGACGGCGGCACGTGGGAGATGCAGTTTTTCGATGCGAAAGCTTCGAGAATGATAACAATGGAAGACGTTGTTGCTTGTTCAAGAGAAGGGAGGGTAGTTTCGAAAGGAAGGAACTGGGTTTCGTACGAAGGGAAATGCATGGAAAGCAAAAACGACATGCGTTTTGTGGTGAAGGAAATCACTGATCCAACGTCCCTTCCGTTGAGATTCTGGGAAGATGCGGTGAAGTTTGAGAAGAAGGTTCGGCACGGTAACATTGTCAAGCTTGTTGCCACGTGTCGCTCAGGGAAGAGGGGGTACTTGGTTTATGAGAGTGTGGAGGGAGAGAGGAATCTCGCCGAGATTGTGAGCGGTTTGAGTTGGCAACGGAGGTGGAAGGTTGCGGTGGGGATCGCCAAGGCGCTTAAGTTTTTGCATTGCGAGTGTTGTTCTACGGTCTGGGAGCTCGCCGACGAGGTTCTGTCGCCGGAGGTTGTTTTGGTGGACGGAAAAGGTGTCCCTCGCCTCAAGCTCAGCTCTCCTAGCATGGCGTCTTCGGATGTCAAGGGTTTCATGATCGCTTCCCCTTACGTTGCACCAGAGGCAAGGAATAATAGTAGTGGAGATGTGACAGAGAAGAGTGAAATATACGGATTCGGAGTTATGCTGATTGAATTATTGACTGGAAGAACCACTACGGACATTGAAGCAACAGGGAATGGAAATGGGGTGCACCACCATCAGAGCGTTGTAGAGTGGGCCCGATACTGTTACTCTGACTGTCATATTGACACGTGGATTGATCCCGCGATCAAGGGTGGAGATGAGTCAACCCAACACCATAACGACGTCGTTGAGGCCATGAACCTCGCCTTGCACTGCACCGCCACTGATCCTAAAGCCAGACCAACCGCAAGAGAAGTTCTTAAGACTCTAGAAGCAATTCACACCAACAACACACAATTATTTTGCTCTTCATGA 2886 0.483 MARVMMTWFRFFLFLIILLNSLNPSHGGEETESQEDRELLLSFKASIHDDPLHSLSNWLPTTSLCNWNGITCNMNNNNAGVRVGVVVVVTAISLSGKNISGEASSSVLHLQNLTSLDLSNNQLTKLLHFDQPPPFLSPLRYLNLSNNNLTGPLPRSLFSSSFSLLHTLDLSNNMFSGEIPPQIALFSDLTYLDIGGNLLVGHIPTSVTELKNLQYFTLASNQLVGEIPKEIQAMKNLKWIYFGYNNLSGEIPSAIGELASLNHLDLVYNNLTGAIPESLGNLTDLEYLFLYQNKLNGPIPRSIFNLKKLVSLDLSDNSLSGEIPELVVNLQRLEILHLFSNNFSGNIPNGLESLPRLQLILFSNKFEGRIPRSLSTCKTLRRVRLQNNKLSGNLPQELTKLTQVYFLDISGNHFSGRIDDRQWSMPSLQMLNLANNFFAREIPNSFGSESLEDLDLSQNRFSGEIPRGIFENSKDLVQLKLGNNNLYGTIPEELCSCKKLVALDLSHNNLNGQIPVKLAEMPVLGVLDLSENQFSGEIPQNLGKVESLVQVNVSHNRFHGSLPSTGAFLAINASAVAGNDLCDGESEASNGLPPCKGSRNQTWLFLVLCFLFGLVAIAVASFLVVLVRRKKNLEMRRVENNEDGGTWEMQFFDAKASRMITMEDVVACSREGRVVSKGRNWVSYEGKCMESKNDMRFVVKEITDPTSLPLRFWEDAVKFEKKVRHGNIVKLVATCRSGKRGYLVYESVEGERNLAEIVSGLSWQRRWKVAVGIAKALKFLHCECCSTVWELADEVLSPEVVLVDGKGVPRLKLSSPSMASSDVKGFMIASPYVAPEARNNSSGDVTEKSEIYGFGVMLIELLTGRTTTDIEATGNGNGVHHHQSVVEWARYCYSDCHIDTWIDPAIKGGDESTQHHNDVVEAMNLALHCTATDPKARPTAREVLKTLEAIHTNNTQLFCSS 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211975g00002 961 ProSiteProfiles Leucine-rich repeat profile. 112 133 IPR001611 GO:0005515
Stsc211975g00002 961 Gene3D Ribonuclease Inhibitor 33 202 IPR032675 -
Stsc211975g00002 961 SUPERFAMILY L domain-like 33 364 - -
Stsc211975g00002 961 PRINTS Leucine-rich repeat signature 113 126 - -
Stsc211975g00002 961 PRINTS Leucine-rich repeat signature 306 319 - -
Stsc211975g00002 961 Gene3D Phosphorylase Kinase; domain 1 655 746 - -
Stsc211975g00002 961 Pfam Protein kinase domain 687 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211975g00002 961 FunFam Leucine-rich repeat receptor-like protein kinase TDR 135 356 - -
Stsc211975g00002 961 SUPERFAMILY Protein kinase-like (PK-like) 672 954 IPR011009 -
Stsc211975g00002 961 PANTHER RECEPTOR-LIKE PROTEIN 55 332 951 - -
Stsc211975g00002 961 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 357 591 - -
Stsc211975g00002 961 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Stsc211975g00002 961 SMART LRR_sd22_2 186 212 - -
Stsc211975g00002 961 SMART LRR_sd22_2 282 308 - -
Stsc211975g00002 961 SMART LRR_sd22_2 110 131 - -
Stsc211975g00002 961 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Stsc211975g00002 961 Pfam Leucine rich repeat 450 510 IPR001611 GO:0005515
Stsc211975g00002 961 Gene3D Transferase(Phosphotransferase) domain 1 751 959 - -
Stsc211975g00002 961 ProSiteProfiles Protein kinase domain profile. 669 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211975g00002 961 Gene3D Ribonuclease Inhibitor 309 590 IPR032675 -
Stsc211975g00002 961 Pfam Leucine Rich repeat 109 124 IPR001611 GO:0005515
Stsc211975g00002 961 Pfam Leucine Rich Repeat 139 157 IPR001611 GO:0005515
Stsc211975g00002 961 SUPERFAMILY L domain-like 275 563 - -
Stsc211975g00002 961 Gene3D Ribonuclease Inhibitor 203 302 IPR032675 -
Stsc211975g00002 961 SMART LRR_typ_2 330 354 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 449 472 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 110 131 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 210 233 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 258 281 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 136 160 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 282 306 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 425 448 IPR003591 -
Stsc211975g00002 961 SMART LRR_typ_2 521 545 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211975g00002 Stsc-Chr211975 25639 29661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211975g00002 38 948 Receptor kinase-like Gene Family AT2G25790 47.222 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Stsc211975g00002 Pkinase 4.9e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211975g00002 - - adu:107470770 1326.61