Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211975g00001 ATGATGGCGGTGAGTTCGGGGAGCAAAGAAGGAAGCGGAGGAGGAGGAGGAGGGAGTAAGGTGATGATGGACAACGGCAAGTACGTGAGGTACACGCCGGAGCAGGTGGAGGCACTTGAGAGGCTCTACCATGAATGCCCCAAACCAAGCTCCCTTCGCCGCCAGCAACTCATCAGAGACTGCCCTATCCTCTCCAACATCGAGCCCAAACAGATCAAGGTCTGGTTCCAAAATCGAAGATGCCGAGAGAAGCAGCGGAAAGAGGCGTCACGGCTGCAAGCTGTAAACAGGAAGCTGACAGCAATGAATAAACTGCTGATGGAGGAAAACGACAGATTGCAGAAACAAGTCTCACACCTTGTCTATGAGAACACCTTTTTCCGCCAACACACTCAACAAAATCAAGCGGCGCTTGCCACCACGGACACCAGCTGTGAGTCCGTCGTAACAAGCGGTCAGCGCAACTTGACACCTCAGCATCCCCCAAGGGATGCAAGCCCTGCAGGACTTTTGTCGATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCCACTGGAACTGCTGTGGAGTGGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCATGCGGCCTCGTGGGTCTAGAACCTGCCAGGGTTGCTGAAATACTCAAAGATCGGCTATCATGGAATCGTGACTGCCGAACCGTGGATGTTCTAAATGTGATGTCCACGGGAAATGGAGGAACCATTGAACTTCTTTACATGCAGTTGTATGCTCCAACAACTTTAGCACCTGGCCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGATGGTAGTCTTGTGGTGTGTGAAAGATCACTGAACAACACTCAGAATGGTCCTGCTATGCCAGCAGTGCAGCATTTTGTTAGAGCAGACATGTTGCCAAGTGGGTATCTTATTAGGCCTTGTGAAGGAGGAGGATCCATTATTCATATTGTTGATCACATGATCTTAGAGCCATGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGCTACTAGCACAAAGAACAACCACTGCGGCTTTACGCCATTTAAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTCACAGGTTGGGGAAGAAGGCCTGCAGCTCTACGTGGCCTTAGTCAGAGATTGAGCAAGGGATTCAATGAAGCTGTTAATGGTTTTGCTGATGATGGATGGTCCTTGTTGGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAACTCATCACATAGCAAGATGATGGGAGCAAACCTTGGCTACAATGGTGGATTCCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCATCTATGTTGTTGCAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGAGGGAGCACCGGTCGGAATGGGCTGATAGCAGCATTGATGCTTATTCAGCCACCGCCATCAAAGCCGGTCCATGTAACTTGCCGGCTGTCCGAGCAGGCGGTTTCGGGGGTCAGGTCATTCTTCCACTGGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTCATTAAGCTTGAAAACATGGGTTACTATAGGGATGACATGACTATACCTGGTGATGTTTTCCTCTTGCAGCTCTGCAGTGGAGTGGATGAGAATGCAGTTGGCACAAGTGCAGAACTTATATTTGCTCCCATTGATGCATCCTTTTCTGATGATGCTCCAATTTTACCTTCCGGATTTCGCATCATACCTCTTGATTCAACCTCGGATGCTGGTAGTCCTAACCGTACCCTTGATCTGGCGTCGGCGCTGGAGGTTGGAACGGCAGGGAGTAAAGCAGGCGGCGAAAACTCAGGCCATTCCGGGAGCACAAAGTCAGTGATGACAATAGCATTTCAGTTTGCATTTGAAGTCCATCTTCAGGAAAATATTGCAGCCATGGCTAGGCAATATGTCCGGAGTATCATTGCATCTGTTCAAAGGGTTTCACTAGCCCTTTCGCCCTCGCGATTCGGTTCTCAAAATGCTTTCCATTTGCCTCCCGGTACCCCTGAGGCACAAACACTAGCTAGGTGGATTTCTAGCAGCTATAGGTTCTATCTTGGGGTAGAACTGTTGAAGAGTGAGGGTAGTGAACCAATTCTCAAATCTCTTTGGCATCACACAGATGCTGTTTTGTGCTGCTCTCTCAAGGCATTACCTGTTTTCACGTTTGCAAATCAAGCTGGGCTTGACATGCTAGAAACAACATTGGTTGCACTTCAAGACATCACCCTTGAAAAAATCTTGGATGACAATGGAAAGAAAACTCTCTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATACAAGGTGGGATATGTTTGTCAAGCATGGGAAGGCCAGTGTCATATGAGAGAGCAGTGGCATGGAAAGTGTTGAACGAAGAAGAAACGGCTCACTGCATCTGCTTCATGTTCATCAATTGGTCTTTTGTCTGA 2526 0.4854 MMAVSSGSKEGSGGGGGGSKVMMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQQNQAALATTDTSCESVVTSGQRNLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWNRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPAVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMILEPWSVPEVLRPLYESSMLLAQRTTTAALRHLRQISQEVSQPSVTGWGRRPAALRGLSQRLSKGFNEAVNGFADDGWSLLESDGIDDVTLLVNSSHSKMMGANLGYNGGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSATAIKAGPCNLPAVRAGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSTSDAGSPNRTLDLASALEVGTAGSKAGGENSGHSGSTKSVMTIAFQFAFEVHLQENIAAMARQYVRSIIASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLARWISSSYRFYLGVELLKSEGSEPILKSLWHHTDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKILDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEETAHCICFMFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211975g00001 841 CDD homeodomain 27 87 IPR001356 GO:0003677
Stsc211975g00001 841 Pfam Homeodomain 27 85 IPR001356 GO:0003677
Stsc211975g00001 841 SMART HOX_1 24 90 IPR001356 GO:0003677
Stsc211975g00001 841 CDD bZIP 79 118 - -
Stsc211975g00001 841 ProSiteProfiles START domain profile. 163 384 IPR002913 GO:0008289
Stsc211975g00001 841 ProSiteProfiles 'Homeobox' domain profile. 22 86 IPR001356 GO:0003677
Stsc211975g00001 841 Gene3D - 200 381 IPR023393 -
Stsc211975g00001 841 Gene3D - 19 93 - -
Stsc211975g00001 841 Coils Coil 82 116 - -
Stsc211975g00001 841 SMART START_1 172 375 IPR002913 GO:0008289
Stsc211975g00001 841 Pfam START domain 173 374 IPR002913 GO:0008289
Stsc211975g00001 841 FunFam Homeobox-leucine zipper protein REVOLUTA 27 82 - -
Stsc211975g00001 841 CDD START_ArGLABRA2_like 167 375 - -
Stsc211975g00001 841 Pfam MEKHLA domain 700 840 IPR013978 -
Stsc211975g00001 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 22 841 IPR044830 GO:0003700
Stsc211975g00001 841 MobiDBLite consensus disorder prediction 1 23 - -
Stsc211975g00001 841 SUPERFAMILY Homeodomain-like 26 90 IPR009057 -
Stsc211975g00001 841 SUPERFAMILY Bet v1-like 172 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211975g00001 Stsc-Chr211975 9089 15405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211975g00001 14 841 Homeobox Transcription Factor Family AT4G32880 78.998 0.0 1376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211975g00001 START 7.7e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211975g00001 K09338 - gmx:100815727 1538.09