Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211972g00002 ATGAGGGCAGAGATAACGGAAACTGGAAAGTATTTTGGTACATCACAGCAAACAAGGGCAGAGGTATCAACTTATGCTCTGTTTCAGTGCAGAGATTACCTCTCTCAGACTGATTGCCTCGCTTGCTTTGACGCCGCGGCCGCCTTGAACCGCAACTGTTCCGATCGTAGTAATAGCGCCAGAGTCACCTTTGACGGATGTTTTCTAAGATATGACAGTGAAATGTTCTACGACAAGACCACAGAACCTGGCAACGATGGTGTGTTATGTGGAAGCATGTCTACGAAAGACACAGCTTCCACTTTTGGTGCAACTGTGACTCAGGTTCTCAAGAATCTCCAATTAGCAACACCAAGAATCAAAGGCTTCTTTGCTGCTACTAAGACACAACTAGATAGCGGCGGTTCAGTCTATGCGGTCGCGCAATGCGTTGAAACCGCCACTAATAGCTCTTGCTTGGATTGCTTGACTTTTGGATTTGTTAACTTGCAGAGTAGTTGCATTCCCACCATAGATGGCAGGGCTTATAATGCAGGGTGCTTTATGAGATACTCAACTTCACCCTTCTTTGCTGATAACCAAACCATTGACATCACTCCCTATTTGAAACAAGGAGGTTCAAGCAACAAATGGGACATTATTGGTGGTGTTGTTGGAGGCATTGCTCTTTTTGTGATCATCCTCATTGCATTATTTTTCTGGTATAAACGGTCCAACAAGAAAAAACAGGATATTCCTAGAGGTGATATATTGGGCGCAACTGAATTGAAAGGTCCAATTAACTACAGCTATAACGATTTGAAATCTGCAACAGAAAATTTCACTGAAAATAATAAACTTGGAGAAGGAGGCTTTGGTGATGTATACAAGGGAATTCTGGAAAATGGAAAAATTGTGGCCGTCAAGAAATTGATTCTAAGCCAATCCAAGAAGATGAAGGATGATTTTGAAACTGAAGTAAAACTTATAAGTAATGTGCAACATCGAAACCTTCTTAGATGTTGCAGTAAAGACCAAGAAAGAATCCTTGTTTATGAGTACATGGCAAATAAGAGCCTTGATAAATTCTTATTTGGTTAG 1080 0.412 MRAEITETGKYFGTSQQTRAEVSTYALFQCRDYLSQTDCLACFDAAAALNRNCSDRSNSARVTFDGCFLRYDSEMFYDKTTEPGNDGVLCGSMSTKDTASTFGATVTQVLKNLQLATPRIKGFFAATKTQLDSGGSVYAVAQCVETATNSSCLDCLTFGFVNLQSSCIPTIDGRAYNAGCFMRYSTSPFFADNQTIDITPYLKQGGSSNKWDIIGGVVGGIALFVIILIALFFWYKRSNKKKQDIPRGDILGATELKGPINYSYNDLKSATENFTENNKLGEGGFGDVYKGILENGKIVAVKKLILSQSKKMKDDFETEVKLISNVQHRNLLRCCSKDQERILVYEYMANKSLDKFLFG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211972g00002 359 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 25 358 - -
Stsc211972g00002 359 FunFam Cysteine-rich receptor-like protein kinase 2 85 189 - -
Stsc211972g00002 359 FunFam Cysteine-rich receptor-like protein kinase 2 237 347 - -
Stsc211972g00002 359 Pfam Salt stress response/antifungal 10 73 IPR002902 -
Stsc211972g00002 359 Pfam Salt stress response/antifungal 90 186 IPR002902 -
Stsc211972g00002 359 ProSiteProfiles Gnk2-homologous domain profile. 1 76 IPR002902 -
Stsc211972g00002 359 Gene3D Phosphorylase Kinase; domain 1 251 347 - -
Stsc211972g00002 359 ProSiteProfiles Gnk2-homologous domain profile. 84 189 IPR002902 -
Stsc211972g00002 359 Pfam Protein kinase domain 274 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211972g00002 359 CDD TM_EGFR-like 213 242 - -
Stsc211972g00002 359 SUPERFAMILY Protein kinase-like (PK-like) 256 358 IPR011009 -
Stsc211972g00002 359 ProSitePatterns Protein kinases ATP-binding region signature. 280 303 IPR017441 GO:0005524
Stsc211972g00002 359 Gene3D - 88 189 IPR038408 -
Stsc211972g00002 359 Gene3D - 1 76 IPR038408 -
Stsc211972g00002 359 ProSiteProfiles Protein kinase domain profile. 274 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211972g00002 Stsc-Chr211972 15233 20249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211972g00002 9 358 Receptor kinase-like Gene Family AT1G70530 34.349 2.10e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211972g00002 Stress-antifung 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211972g00002 - - gmx:100811953 441.425