Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211963g00005 ATGGTGATGGAAGATCATGGTGCTGCTGCTGCATCATTTGATGATGCTAGTTCAACAGAAGAATGGTTGCTCCATGCACAAAAGCTTGTTCCTGCTGCAATGTCTAAGGCTAAAGAGGTTAAAGGCTTTCAAGTTAAATGGAAGATGATCATCTCAAAATTGGAGCAGATTCCGTCGCGTTTATCGGATTTATCAAGCCACCCTTGCTTCTCCAAGAATGCTCTCTGCAAGGAGCAATTGCAATCAGTCTCCAAGTCCCTCGAAGAAGCGGTCGAATTGGCCGAGCTTTGTCTGAAGGAGAAGTATGAAGGTAAGCTTCGGATGCAGAGCGATCTCGACGCGCTAGCCGGGAAACTGGATTTGAATTTGAAAGATTGCAGCTTGCTTATCAAGACCGGTGTTCTAGGAGAGGCTACTCTTCCTTTAATGGTGTCTGGTTCTGTGAAAGATTCTGATGTAGATTTTGCATCCATTAAGGAATTGCTTGCAAGGCTTCAGATAGGTAACTTGGAAGCCAAGCAAAGAGCATTGGAGAAGCTCTATGATGTGATCAAAGAAGATGAGAAGAGTGTTTTGGCTGTTCTTGGAAGAAGCAATGTTGCTGCATTGGTTCAATTGCTTACAGCAACATCTCCAAGGATTAGGGAAAAGGCTGCTACTCTTGTATGTATTCTTGTGGAATCCGGTAGCTGCGAAAATTGGCTGGTTTCTGAAGGTGTTCTGCCGCCTCTGATTCGGCTCGTTGAATCCGGCAGTGCTTTGGGGAAAGAGAAGGCAATAATTTCTCTTCAGAGGCTGTCAATTTCGGCCGAAACCACCCGTGCTATTGTTGGACACGGTGGCGTTCGGCCTTTAATTGAGCTCTGCCAAACAGGGGACTCTGTTTCTCAGGCTGCGGCCGCTTGCGCTTTGAAGAATGTGTCGGCCGTGCCCGAGGTTAGGCAGGTTTTGGCTGAAGAAGGCATTGTGAGAGTGATGATTGAGCTTCTTAGCTGTGGAATTTTGTTGGGATCGAAAGAGTATGCGGCCGAGTGCTTGCAGAATCTAACCGCGAGCAACGAGAATCTAAGAAGATCTGTCATAGCAGAAGGCGGATTTAACAATCTCCTGGCCTATCTAGACGGTCCTCTTCCTCAAGAATCCGCGGTCGCGGCCTTAAGGAATCTGGTTGGTTCTGTTCCTGAGGATGTTCTAGATTCCCTTGGCTTGCTCCCTAGATTGGTTCATGTTCTTAAGTCGGGTTCCTTGGGTGCCAAGCAAGCCGCAGCATCGGTCATTTGCCGGATTTGTGGCCCGGTTGAGATGAAGAGAATAATCGGCGAAGCCGGCTGCATACCTCTTCTAATCAACTTGCTTGAGGCTAAAGCAAACAATGCTAGAGAGGTTGCTGCACAGGCAATTTCGAGCTTGATGGTTCTGTCGGCGAATCGAAGAGAGGTTAAGAAGGATGATAAGGTTGTTGTGCCTAGTTTGGTTCAGTTGCTTGATCCAAATCCACAGAACACTGCAAAGAAATATGCAGTTTCATGCCTTGCATCACTTTCTTCATGCAAGAAATGTAAGAAGCTTATGATTTCTTATGGAGCAATAGGATATCTGAAGAAGCTTAGTGAGATGGAGATTCCTGGATCTAAGAAGCTTCTAGAGAGATTGGAAAGAGGAAAACTCAGAAGCTTGTTTAGCAGAAAATAA 1692 0.4616 MVMEDHGAAAASFDDASSTEEWLLHAQKLVPAAMSKAKEVKGFQVKWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQSVSKSLEEAVELAELCLKEKYEGKLRMQSDLDALAGKLDLNLKDCSLLIKTGVLGEATLPLMVSGSVKDSDVDFASIKELLARLQIGNLEAKQRALEKLYDVIKEDEKSVLAVLGRSNVAALVQLLTATSPRIREKAATLVCILVESGSCENWLVSEGVLPPLIRLVESGSALGKEKAIISLQRLSISAETTRAIVGHGGVRPLIELCQTGDSVSQAAAACALKNVSAVPEVRQVLAEEGIVRVMIELLSCGILLGSKEYAAECLQNLTASNENLRRSVIAEGGFNNLLAYLDGPLPQESAVAALRNLVGSVPEDVLDSLGLLPRLVHVLKSGSLGAKQAAASVICRICGPVEMKRIIGEAGCIPLLINLLEAKANNAREVAAQAISSLMVLSANRREVKKDDKVVVPSLVQLLDPNPQNTAKKYAVSCLASLSSCKKCKKLMISYGAIGYLKKLSEMEIPGSKKLLERLERGKLRSLFSRK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211963g00005 563 Gene3D - 396 540 IPR011989 -
Stsc211963g00005 563 SUPERFAMILY ARM repeat 151 540 IPR016024 -
Stsc211963g00005 563 Pfam Armadillo/beta-catenin-like repeat 271 308 IPR000225 GO:0005515
Stsc211963g00005 563 Pfam Armadillo/beta-catenin-like repeat 434 470 IPR000225 GO:0005515
Stsc211963g00005 563 SMART arm_5 269 309 IPR000225 GO:0005515
Stsc211963g00005 563 SMART arm_5 310 351 IPR000225 GO:0005515
Stsc211963g00005 563 SMART arm_5 473 516 IPR000225 GO:0005515
Stsc211963g00005 563 SMART arm_5 187 227 IPR000225 GO:0005515
Stsc211963g00005 563 SMART arm_5 432 472 IPR000225 GO:0005515
Stsc211963g00005 563 SMART arm_5 391 431 IPR000225 GO:0005515
Stsc211963g00005 563 Coils Coil 167 190 - -
Stsc211963g00005 563 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 561 - -
Stsc211963g00005 563 Gene3D - 155 395 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211963g00005 Stsc-Chr211963 18902 21084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211963g00005 208 481 U-box Gene Family AT3G54790 29.032 7.97e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211963g00005 - - gmx:100809488 848.58