Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211963g00004 ATGATTTCCGATTTCGCAACTGTGGCAGGGTTTGCTTTCATCTACATGGAAGATGAAAGGGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAATTTGGAAGAAAGGGGCGCCGTATACGTGTTGAGTGGACAAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAAACCCTCAAGCAATTCAAGACCATCGAAGACTTTGTTTATCATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAGACACTTCGATCCCTATGGGAAAATATCAAACATAAGGATAAGGAGGAATTTTGCTTTTATACAATATGAAACCCAGGAGGATGCTACTAGAGCTTTGGAAGCAACAAACTTGAGCAAATTTATGGATCGTGTTATCACTGTGGAGTATGCTATTAGAGATGATGATGACAGGAGGAATGGATACAGTCCTGATAGAAGAGGCAATGACTCTCCTGATGGGAGATACGGCCGTGGCAGATCCCCAAGTCCATATCGCAGAGGTAGGGGTAGCCCGGATTATGGTCATGGAGCGAATCCAGCTTCCAGACCAGAACCAAGGGGAAGCCCAAAGTATGAACGAGGTGAAAGCCCAGTTAATGGCAGATATGACAGCCGGTCTCCTCCACCACGAGAAAGGTCTCCTCCTCCACGAGAAAGGTCACGATCCTGA 693 0.456 MISDFATVAGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKPSSNSRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYETQEDATRALEATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGANPASRPEPRGSPKYERGESPVNGRYDSRSPPPRERSPPPRERSRS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211963g00004 230 MobiDBLite consensus disorder prediction 194 230 - -
Stsc211963g00004 230 MobiDBLite consensus disorder prediction 46 70 - -
Stsc211963g00004 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 48 IPR000504 GO:0003723
Stsc211963g00004 230 MobiDBLite consensus disorder prediction 46 60 - -
Stsc211963g00004 230 FunFam Serine/arginine-rich splicing factor RS31 61 151 - -
Stsc211963g00004 230 SUPERFAMILY RNA-binding domain, RBD 9 141 IPR035979 GO:0003676
Stsc211963g00004 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 133 IPR000504 GO:0003723
Stsc211963g00004 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 37 IPR000504 GO:0003723
Stsc211963g00004 230 MobiDBLite consensus disorder prediction 143 161 - -
Stsc211963g00004 230 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 84 - -
Stsc211963g00004 230 MobiDBLite consensus disorder prediction 143 230 - -
Stsc211963g00004 230 Gene3D - 3 52 IPR012677 -
Stsc211963g00004 230 Gene3D - 53 189 IPR012677 -
Stsc211963g00004 230 SMART rrm1_1 70 136 IPR000504 GO:0003723
Stsc211963g00004 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211963g00004 Stsc-Chr211963 13906 15667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211963g00004 10 143 Eukaryotic Initiation Factors Gene Family AT1G49760 26.389 6.42e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211963g00004 K12893 - gmx:100797778 362.073