Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211963g00003 ATGACTTTTCATCCGTGTTCAATTTCCGACATGTTTCAACATAGAAACCTTGATGATTTCCGATTTCGCAACTGTGGCAGGTGTTGTGGGTTTGCTTTCATCTACATGGAAGATGAAAGGGATGCTGAGTATGCAATCAGAAGACTTGATAGAACTGAATTTGGAAGAAAGGGGCGCCGTATACGTGTTGAGTGGACAAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAAACCCTCAAGCAATTCAAGACCATCGAAGACTTTGTTTATCATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTGGAGAGACACTTCGATCCCTATGGGAAAATATCAAACATAAGGATAAGGAGGAATTTTGCTTTTATACAATATGAAACCCAGGAGGATGCTACTAGAGCTTTGGAAGCAACAAACTTGAGCAAATTTATGGATCGTGTTATCACTGTGGAGTATGCTATTAGAGATGATGATGACAGGAGGAATGGATACAGTCCTGATAGAAGAGGCAATGACTCTCCTGATGGGAGATACGGCCGTGGCAGATCCCCAAGTCCATATCGCAGAGGTAGGGGTAGCCCGGATTATGGTCATGGAGCGAATCCAGCTTCCAGACCAGAACCAAGGGGAAGCCCAAAGTATGAACGAGGTGAAAGCCCAGTTAATGGCAGATATGACAGCCGGTCTCCTCCACCACGAGAAAGGTCTCCTCCTCCACGAGAAAGGTCACGATCCTGA 753 0.4502 MTFHPCSISDMFQHRNLDDFRFRNCGRCCGFAFIYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRKPSSNSRPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYETQEDATRALEATNLSKFMDRVITVEYAIRDDDDRRNGYSPDRRGNDSPDGRYGRGRSPSPYRRGRGSPDYGHGANPASRPEPRGSPKYERGESPVNGRYDSRSPPPRERSPPPRERSRS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211963g00003 250 SMART rrm1_1 90 156 IPR000504 GO:0003723
Stsc211963g00003 250 SMART rrm1_1 3 64 IPR000504 GO:0003723
Stsc211963g00003 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 160 IPR000504 GO:0003723
Stsc211963g00003 250 FunFam Serine/arginine-rich splicing factor RS31 81 171 - -
Stsc211963g00003 250 MobiDBLite consensus disorder prediction 214 250 - -
Stsc211963g00003 250 Gene3D - 8 80 IPR012677 -
Stsc211963g00003 250 SUPERFAMILY RNA-binding domain, RBD 23 163 IPR035979 GO:0003676
Stsc211963g00003 250 MobiDBLite consensus disorder prediction 66 80 - -
Stsc211963g00003 250 Gene3D - 81 170 IPR012677 -
Stsc211963g00003 250 MobiDBLite consensus disorder prediction 66 89 - -
Stsc211963g00003 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 68 IPR000504 GO:0003723
Stsc211963g00003 250 MobiDBLite consensus disorder prediction 163 250 - -
Stsc211963g00003 250 MobiDBLite consensus disorder prediction 163 181 - -
Stsc211963g00003 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 104 - -
Stsc211963g00003 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 153 IPR000504 GO:0003723
Stsc211963g00003 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 57 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211963g00003 Stsc-Chr211963 13906 15667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211963g00003 26 163 Eukaryotic Initiation Factors Gene Family AT1G49760 26.351 1.83e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211963g00003 K12893 - gmx:100797778 361.688